Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_L24
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AL132862-3|CAB70225.1|  294|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical
           protein F01D4.7 protein.
          Length = 341

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 285 YLNLFCTLLVVLH*QP*IFFKKQFCDCFLKSGTIVIHDRIHV 160
           Y  L  + L+  H    I F  QFC CFL+S T+ I    H+
Sbjct: 45  YFFLNYSNLLAFHFNIKILFFFQFCSCFLQSATLAISQTHHL 86


>AL132862-3|CAB70225.1|  294|Caenorhabditis elegans Hypothetical
           protein Y73F8A.6 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 212 QNCFLKKI*GCQCSTTSRVQNKF--KYSKPNQCSL 310
           +NCF K   GC+C+      N+    Y+ P+QC +
Sbjct: 152 ENCFPKPSGGCKCNEKDANGNEVVTAYNNPDQCKV 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,840,951
Number of Sequences: 27780
Number of extensions: 323964
Number of successful extensions: 519
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)