Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_L22
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 190 9e-50
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 190 9e-50
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 28 1.0
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 28 1.0
SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11 |Schizosaccharom... 27 1.3
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 27 1.8
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 2.3
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 26 3.1
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 26 3.1
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 25 5.4
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 5.4
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 5.4
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 5.4
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 7.2
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 25 7.2
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 25 9.5
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 25 9.5
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 25 9.5
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 9.5
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 25 9.5
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 9.5
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 190 bits (464), Expect = 9e-50
Identities = 91/134 (67%), Positives = 103/134 (76%)
Frame = -1
Query: 480 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 301
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 300 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 121
TG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 120 AAGKTVNLKRQPAP 79
A GKTV L+RQPAP
Sbjct: 121 AQGKTVQLRRQPAP 134
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 190 bits (464), Expect = 9e-50
Identities = 91/134 (67%), Positives = 103/134 (76%)
Frame = -1
Query: 480 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 301
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 300 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 121
TG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 120 AAGKTVNLKRQPAP 79
A GKTV L+RQPAP
Sbjct: 121 AQGKTVQLRRQPAP 134
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 368 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVIF 484
S L+ F+ + IVPC+ + + ++P R EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.9 bits (59), Expect = 1.0
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -2
Query: 221 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPTKAAHIVSGTEK 42
SAS S S++S+ S D ++ +R R RKP + +P+ + + P + + K
Sbjct: 56 SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114
Query: 41 PVL 33
PV+
Sbjct: 115 PVI 117
>SPAC57A10.14 |sgf11||SAGA complex subunit Sgf11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 385 SVQSWRHC-RHQRQWCSSKGYATQSIPWKDRSRVQRYCSCSRCDCQQACSR 236
S+Q C +H RQ+C+ GY + S V Y SC C + A SR
Sbjct: 36 SLQKCPACNKHCRQYCTKPGYDIYGNSVQTPSNVP-YYSCLMCKREIAASR 85
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/44 (27%), Positives = 17/44 (38%)
Frame = -3
Query: 409 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRY 278
+ L H SW + R+ C +KGY PW + Y
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCAFDAY 242
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 2.3
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +2
Query: 470 EFVIFEPCVTKLDG 511
EFVIFE C+T+++G
Sbjct: 726 EFVIFEACLTRIEG 739
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +1
Query: 280 NVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 414
N + + C V H + T+ V N +H++ ERNS+
Sbjct: 81 NKIASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 26.2 bits (55), Expect = 3.1
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +1
Query: 109 LAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESM 273
+A SLG Q +L +LSA G M D+ + PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 139 ATEGSQGCRQDRQPEETASSPLKLP 65
+ EG+Q D+ EE +PLKLP
Sbjct: 351 SVEGNQDEESDQDDEEKIYNPLKLP 375
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.4 bits (53), Expect = 5.4
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +1
Query: 76 VGSWLSLQVDGLAGSLGF 129
+ WL+++ DG++G +GF
Sbjct: 1082 INRWLAIRTDGISGLVGF 1099
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 214 DALRYNPSANTLVDNHTES 270
D R N S N ++DNHT++
Sbjct: 29 DPARKNESTNDVIDNHTDT 47
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -2
Query: 182 SADKTSLRESKRMRGY*RKPRLPARPS-T*RDSQLPTKAAHIVSGTEKPVLLAPIP 18
S+ T + + M KPRLP RPS T + P + +S P+ P P
Sbjct: 340 SSPYTHIAPASEMSLIPEKPRLPPRPSHTLSELSSPALTSENLSSKPSPLFPPPPP 395
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 183 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 88
K DF KR E +R+ +E A KTV L Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 97 EETASSPLKLPTSSVELRNPSYL 29
+ET SPLKLPT + + SY+
Sbjct: 504 DETVFSPLKLPTKAQLINAYSYI 526
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -3
Query: 280 YCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP 164
+ S R + +Q + K+YTE H + ++ +TRLP
Sbjct: 466 WISFLRFELEQPLNSKNYTEHHARVSNVMEMIRNKTRLP 504
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 208 DIDALRYNPSANTLVDNHTESMSSNVV 288
D+DALR NP A L+DN + + +
Sbjct: 33 DVDALRLNPEA-PLLDNEQRQSAQDFI 58
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 109 LAGSLGFLQ*PLILFDSLKEVLSALGV 189
LAG L F + LFD LKE+ GV
Sbjct: 22 LAGDLVFRPNAIELFDELKEICKDAGV 48
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -2
Query: 200 SMSSTPSADKTSLRE 156
SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = -3
Query: 394 VHESVQSWRHCRHQRQWCSSKGYA---TQSIPWKDRSRVQRYCSCS 266
+ E S HC R WCSS A TQ + V +Y S S
Sbjct: 19 IEEPKLSCCHCETCRIWCSSPFMAFSCTQKPSVSENENVGKYASSS 64
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 115 RQDRQPEETASSPLKLPTSSVELRN 41
++ QP SPLK T SVEL N
Sbjct: 204 KETYQPNTFRRSPLKNDTGSVELSN 228
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 24.6 bits (51), Expect = 9.5
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Frame = -1
Query: 381 YKVGDIVDIRGNGAVQKGMPHKV------YHGKTGRVY---NVTAHALGVIVNKRVRGRI 229
Y VGD VD+ NG V M ++ + TG+V N + L ++ +R G
Sbjct: 658 YDVGDRVDVMINGTVTSAMVKEISIMSTEFRLLTGKVIQAPNSLLNTLWILNMRRSDGIA 717
Query: 228 IPKRINIR----VEHVKHSKCR-QDFLKRVKEN 145
P +N++ ++ ++ + + DFLK K +
Sbjct: 718 DPVTVNLKFGTTLQQIEQLRIKIIDFLKEEKRD 750
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,913
Number of Sequences: 5004
Number of extensions: 43326
Number of successful extensions: 174
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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