Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_L20
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    31   0.17 
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   2.1  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    27   2.8  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    27   2.8  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   4.8  
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.8  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    25   8.5  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   8.5  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
            Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 534  IWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLFGLM 409
            ++F + C +S+  G+  +   +PI  IP ++V      FGL+
Sbjct: 1012 LFFSINCFLSVAGGILSVSSAMPIFMIPAVIVCLAGYYFGLL 1053


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = -1

Query: 591  VLNTFVLISFWTEPLTMSRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLFG 415
            +LN F    + T+ L  + +   + CV++I   +  +  ++PI  +P   V  +  L G
Sbjct: 959  ILNRFSKDMYATDNLLWASLEGMLLCVMAILITMLNVTLVMPIFMVPAAFVSLLVYLHG 1017


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 546 TMSRIWFYVACVVSICFGL-CYIDYLIPIHAIPT 448
           T   I    ACV+S C G+   I Y   IH +PT
Sbjct: 551 TSKAIGTMAACVISACIGMGSIIFYGASIHPVPT 584


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -1

Query: 282 KAANGDYSVQEDEDSSYIVDSREGVEEMERSDKE 181
           ++ANGD + Q+D   S + +  +G+EE E  +++
Sbjct: 19  ESANGD-TKQDDSKKSQVEEEEDGIEESELGEEK 51


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 507 SICFGLCYIDYL 472
           S+CFG CY+D L
Sbjct: 323 SVCFGFCYVDTL 334


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +3

Query: 195 SPSLQRLPA----NPLCN*SPHLLGPSNPHWRLSSWKANRR 305
           S SL  LP     +P  + + + + PS+ H RLSSW++ ++
Sbjct: 3   SSSLANLPILLAIHPALHYATYRVSPSSLHIRLSSWRSRKQ 43


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 291 SMKKAANGDYSVQEDEDSSYIVDSREGVEEME 196
           S K   N  YS  +DED    +DS+  ++ ME
Sbjct: 2   SSKLTVNAHYSPLKDEDPLDHIDSQTALDSME 33


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
 Frame = +2

Query: 344 ADDFPNASPKFDIRSTLAITAVISPNKTVT---YSTIMVGIA*IGIK*SI*QSPKQIDTT 514
           ++D P+ASP+  +RS    + V  P +T T    S + V  A   I  +   SP ++   
Sbjct: 216 SNDKPSASPRISVRSLGNSSVVRPPTRTSTTRPLSRVNVTNASGSISKNS-TSPSKVKVN 274

Query: 515 QAT*NHILDIVSGSVQNDIKTNVFRTNIGT*NTRLYKSGFLAKSTVMIILSL 670
            +T   I+  VS +      + +FR N  + NT+       + STV +  SL
Sbjct: 275 AST--KIVRPVSAAQTVRPGSRIFRENSAS-NTQRPNVSATSNSTVRVASSL 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,212
Number of Sequences: 5004
Number of extensions: 58313
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)