Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_L20
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0992 + 13049871-13050449                                         29   5.1  
07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125     28   8.8  
03_03_0256 + 15898702-15900420                                         28   8.8  

>03_02_0992 + 13049871-13050449
          Length = 192

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 92  PTFRQKQ*GRQRKGFYQRPPLVRPCHR 172
           PT      G +R+G  +RPPL R CHR
Sbjct: 17  PTTTLPSTGFRREGGLRRPPLCRLCHR 43


>07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125
          Length = 790

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 282 SSWKANRRPLVQRRRSGLVSLLTTSPTPHRSSILGARWPSQQSLVQTRPSRTAP 443
           SS  ++ RPL++R  S   SL TT+ + HR     A      +L  T   R  P
Sbjct: 14  SSRLSHSRPLLRRAGSACSSLTTTTTSQHRHGRRRAPPAESNALTTTAAPRPFP 67


>03_03_0256 + 15898702-15900420
          Length = 572

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 198 PSLQRLPANPLCN*S-PHLLGPSNPHWRLSSWKANR 302
           PSL  +P NP  +     +LGP +PH  +SS   NR
Sbjct: 60  PSLHLVPFNPTADQLWAPVLGPQHPHAPISSASGNR 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,610,074
Number of Sequences: 37544
Number of extensions: 386602
Number of successful extensions: 1031
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)