Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_L20
(735 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S82769-1|AAB39369.1| 467|Homo sapiens GABAA receptor gamma 3 su... 36 0.11
AF269144-1|AAF99698.1| 467|Homo sapiens GABAA receptor gamma 3 ... 36 0.11
AF228458-1|AAF63215.1| 449|Homo sapiens GABAA receptor gamma 3 ... 36 0.11
BC031087-1|AAH31087.1| 465|Homo sapiens gamma-aminobutyric acid... 36 0.20
BC131799-1|AAI31800.1| 447|Homo sapiens 5-hydroxytryptamine (se... 35 0.35
AF459285-1|AAL66182.1| 447|Homo sapiens 5-hydroxytryptamine rec... 35 0.35
DQ644022-1|ABG35128.1| 456|Homo sapiens 5-HT3 receptor subunit ... 34 0.46
BC101183-1|AAI01184.1| 471|Homo sapiens 5-hydroxytryptamine (se... 34 0.46
BC101182-1|AAI01183.1| 471|Homo sapiens 5-hydroxytryptamine (se... 34 0.46
AY349353-1|AAQ93477.1| 456|Homo sapiens 5-HT3c1 serotonin recep... 34 0.46
AY349352-1|AAQ93476.1| 441|Homo sapiens 5-HT3c1 serotonin recep... 34 0.46
AY159813-1|AAO38167.2| 471|Homo sapiens 5-hydroxytryptamine ser... 34 0.46
AB065887-1|BAC06104.1| 324|Homo sapiens seven transmembrane hel... 34 0.61
X15376-1|CAA33437.1| 467|Homo sapiens GABA-A receptor gamma 2 s... 32 1.9
BC074795-1|AAH74795.1| 467|Homo sapiens gamma-aminobutyric acid... 32 1.9
BC069348-1|AAH69348.1| 467|Homo sapiens gamma-aminobutyric acid... 32 1.9
BC059389-1|AAH59389.1| 475|Homo sapiens gamma-aminobutyric acid... 32 1.9
AF165124-1|AAD50273.1| 467|Homo sapiens gamma-aminobutyric acid... 32 1.9
AF137396-7|AAG41681.1| 326|Homo sapiens HOR5'Beta7 protein. 31 3.2
M34517-1|AAA99887.1| 108|Homo sapiens omega protein protein. 31 4.3
AJ318022-1|CAC51026.1| 214|Homo sapiens immunoglobulin lambda-3... 31 4.3
X63753-1|CAA45282.1| 1523|Homo sapiens son-a protein. 31 5.7
X63071-1|CAA44793.1| 1179|Homo sapiens DBP-5 protein protein. 31 5.7
M36428-1|AAA36624.1| 483|Homo sapiens protein ( Human son3 prot... 31 5.7
BC101185-1|AAI01186.1| 374|Homo sapiens HTR3E protein protein. 31 5.7
AY026895-1|AAK07692.1| 2386|Homo sapiens NREBP protein. 31 5.7
AF380184-1|AAL34502.1| 2426|Homo sapiens SON DNA binding protein... 31 5.7
AF380183-1|AAL34501.1| 2108|Homo sapiens SON DNA binding protein... 31 5.7
AF380181-1|AAL34499.1| 2325|Homo sapiens SON DNA binding protein... 31 5.7
AF380180-1|AAL34498.1| 2303|Homo sapiens SON DNA binding protein... 31 5.7
AF380179-1|AAL34497.1| 2140|Homo sapiens SON DNA binding protein... 31 5.7
AB028942-1|BAA82971.2| 2309|Homo sapiens KIAA1019 protein protein. 31 5.7
AJ318021-1|CAC50882.1| 215|Homo sapiens immunoglobulin lambda-3... 30 7.5
AF139897-1|AAD50078.1| 344|Homo sapiens BASS1 protein. 30 7.5
>S82769-1|AAB39369.1| 467|Homo sapiens GABAA receptor gamma 3
subunit protein.
Length = 467
Score = 36.3 bits (80), Expect = 0.11
Identities = 25/130 (19%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Frame = -1
Query: 717 EIIDLINSEEVLNTHLSDKMIITV--DLAKNPDLYNLVFYVPMLVLNTFVLISFW-TEPL 547
+ + L N+ E++ T D +++T+ +L++ + + Y+P ++ +SFW +
Sbjct: 222 DFMGLRNTTEIVTTSAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDA 281
Query: 546 TMSRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISNFG 367
T +R + V+++ +P + T M L+VTV F + A + ++ +
Sbjct: 282 TPARTALGITTVLTMTTLSTIARKSLPRVSYVTAMDLFVTVCFLFVFAALMEYATLNYYS 341
Query: 366 EALGKSSAMK 337
++ K
Sbjct: 342 SCRKPTTTKK 351
>AF269144-1|AAF99698.1| 467|Homo sapiens GABAA receptor gamma 3
subunit protein.
Length = 467
Score = 36.3 bits (80), Expect = 0.11
Identities = 25/130 (19%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Frame = -1
Query: 717 EIIDLINSEEVLNTHLSDKMIITV--DLAKNPDLYNLVFYVPMLVLNTFVLISFW-TEPL 547
+ + L N+ E++ T D +++T+ +L++ + + Y+P ++ +SFW +
Sbjct: 222 DFMGLRNTTEIVTTSAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDA 281
Query: 546 TMSRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISNFG 367
T +R + V+++ +P + T M L+VTV F + A + ++ +
Sbjct: 282 TPARTALGITTVLTMTTLSTIARKSLPRVSYVTAMDLFVTVCFLFVFAALMEYATLNYYS 341
Query: 366 EALGKSSAMK 337
++ K
Sbjct: 342 SCRKPTTTKK 351
>AF228458-1|AAF63215.1| 449|Homo sapiens GABAA receptor gamma 3
subunit protein.
Length = 449
Score = 36.3 bits (80), Expect = 0.11
Identities = 25/130 (19%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Frame = -1
Query: 717 EIIDLINSEEVLNTHLSDKMIITV--DLAKNPDLYNLVFYVPMLVLNTFVLISFW-TEPL 547
+ + L N+ E++ T D +++T+ +L++ + + Y+P ++ +SFW +
Sbjct: 204 DFMGLRNTTEIVTTSAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDA 263
Query: 546 TMSRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISNFG 367
T +R + V+++ +P + T M L+VTV F + A + ++ +
Sbjct: 264 TPARTALGITTVLTMTTLSTIARKSLPRVSYVTAMDLFVTVCFLFVFAALMEYATLNYYS 323
Query: 366 EALGKSSAMK 337
++ K
Sbjct: 324 SCRKPTTTKK 333
>BC031087-1|AAH31087.1| 465|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, gamma 1 protein.
Length = 465
Score = 35.5 bits (78), Expect = 0.20
Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 4/164 (2%)
Frame = -1
Query: 711 IDLINSEEVLNTHLSDKMIITV--DLAKNPDLYNLVFYVPMLVLNTFVLISFW-TEPLTM 541
+ L NS E+ +T D +I+T+ DL++ + + Y+P ++ +SFW +
Sbjct: 241 VGLRNSTEITHTISGDYVIMTIFFDLSRRMGYFTIQTYIPCILTVVLSWVSFWINKDAVP 300
Query: 540 SRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISNF-GE 364
+R + V+++ +P + T M L+V+V F + A + + F
Sbjct: 301 ARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCFIFVFAALMEYGTLHYFTSN 360
Query: 363 ALGKSSAMKQVLTCGVVRAVFCLPSMKKAANGDYSVQEDEDSSY 232
GK++ + L P + SV +++D Y
Sbjct: 361 QKGKTATKDRKLKNKASMTPGLHPGSTLIPMNNISVPQEDDYEY 404
>BC131799-1|AAI31800.1| 447|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 3, family member C protein.
Length = 447
Score = 34.7 bits (76), Expect = 0.35
Identities = 21/101 (20%), Positives = 46/101 (45%)
Frame = -1
Query: 684 LNTHLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEPLTMSRIWFYVACVVS 505
+ +L D+++ V + + P LY + VP L +SF+ + +R F + ++
Sbjct: 229 MGNNLYDQIMFYVAIRRRPSLYIINLLVPSSFLVAIDALSFYLPAESENRAPFKITLLLG 288
Query: 504 ICFGLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLL 382
L ++ L+P P I V + L ++ +++ V +
Sbjct: 289 YNVFLLMMNDLLPASGTPLISVYFALCLSLMVVSLLETVFI 329
>AF459285-1|AAL66182.1| 447|Homo sapiens 5-hydroxytryptamine
receptor 3 subunit C protein.
Length = 447
Score = 34.7 bits (76), Expect = 0.35
Identities = 21/101 (20%), Positives = 46/101 (45%)
Frame = -1
Query: 684 LNTHLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEPLTMSRIWFYVACVVS 505
+ +L D+++ V + + P LY + VP L +SF+ + +R F + ++
Sbjct: 229 MGNNLYDQIMFYVAIRRRPSLYIINLLVPSSFLVAIDALSFYLPAESENRAPFKITLLLG 288
Query: 504 ICFGLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLL 382
L ++ L+P P I V + L ++ +++ V +
Sbjct: 289 YNVFLLMMNDLLPASGTPLISVYFALCLSLMVVSLLETVFI 329
>DQ644022-1|ABG35128.1| 456|Homo sapiens 5-HT3 receptor subunit E
splice variant HTR3Ea protein.
Length = 456
Score = 34.3 bits (75), Expect = 0.46
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = -1
Query: 675 HLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEPLTMSRIWFYVACVVSICF 496
+L D+++ V + + P LY + VP L +SF+ + +R+ F + ++
Sbjct: 232 NLYDQIVFYVAIRRRPSLYVINLLVPSGFLVAIDALSFYLPVKSGNRVPFKITLLLGYNV 291
Query: 495 GLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISN 373
L + L+P P I V Y + LM + + I++
Sbjct: 292 FLLMMSDLLPTSGTPLIGV-YFALCLSLMVGSLLETIFITH 331
>BC101183-1|AAI01184.1| 471|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 3, family member E protein.
Length = 471
Score = 34.3 bits (75), Expect = 0.46
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = -1
Query: 675 HLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEPLTMSRIWFYVACVVSICF 496
+L D+++ V + + P LY + VP L +SF+ + +R+ F + ++
Sbjct: 247 NLYDQIVFYVAIRRRPSLYVINLLVPSGFLVAIDALSFYLPVKSGNRVPFKITLLLGYNV 306
Query: 495 GLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISN 373
L + L+P P I V Y + LM + + I++
Sbjct: 307 FLLMMSDLLPTSGTPLIGV-YFALCLSLMVGSLLETIFITH 346
>BC101182-1|AAI01183.1| 471|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 3, family member E protein.
Length = 471
Score = 34.3 bits (75), Expect = 0.46
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = -1
Query: 675 HLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEPLTMSRIWFYVACVVSICF 496
+L D+++ V + + P LY + VP L +SF+ + +R+ F + ++
Sbjct: 247 NLYDQIVFYVAIRRRPSLYVINLLVPSGFLVAIDALSFYLPVKSGNRVPFKITLLLGYNV 306
Query: 495 GLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISN 373
L + L+P P I V Y + LM + + I++
Sbjct: 307 FLLMMSDLLPTSGTPLIGV-YFALCLSLMVGSLLETIFITH 346
>AY349353-1|AAQ93477.1| 456|Homo sapiens 5-HT3c1 serotonin
receptor-like protein protein.
Length = 456
Score = 34.3 bits (75), Expect = 0.46
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = -1
Query: 675 HLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEPLTMSRIWFYVACVVSICF 496
+L D+++ V + + P LY + VP L +SF+ + +R+ F + ++
Sbjct: 232 NLYDQIVFYVAIRRRPSLYVINLLVPSGFLVAIDALSFYLPVKSGNRVPFKITLLLGYNV 291
Query: 495 GLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISN 373
L + L+P P I V Y + LM + + I++
Sbjct: 292 FLLMMSDLLPTSGTPLIGV-YFALCLSLMVGSLLETIFITH 331
>AY349352-1|AAQ93476.1| 441|Homo sapiens 5-HT3c1 serotonin
receptor-like protein protein.
Length = 441
Score = 34.3 bits (75), Expect = 0.46
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = -1
Query: 675 HLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEPLTMSRIWFYVACVVSICF 496
+L D+++ V + + P LY + VP L +SF+ + +R+ F + ++
Sbjct: 217 NLYDQIVFYVAIRRRPSLYVINLLVPSGFLVAIDALSFYLPVKSGNRVPFKITLLLGYNV 276
Query: 495 GLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISN 373
L + L+P P I V Y + LM + + I++
Sbjct: 277 FLLMMSDLLPTSGTPLIGV-YFALCLSLMVGSLLETIFITH 316
>AY159813-1|AAO38167.2| 471|Homo sapiens 5-hydroxytryptamine
serotonin receptor 3E protein.
Length = 471
Score = 34.3 bits (75), Expect = 0.46
Identities = 23/101 (22%), Positives = 45/101 (44%)
Frame = -1
Query: 675 HLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEPLTMSRIWFYVACVVSICF 496
+L D+++ V + + P LY + VP L +SF+ + +R+ F + ++
Sbjct: 247 NLYDQIVFYVAIRRRPSLYVINLLVPSGFLVAIDALSFYLPVKSGNRVPFKITLLLGYNV 306
Query: 495 GLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISN 373
L + L+P P I V Y + LM + + I++
Sbjct: 307 FLLMMSDLLPTSGTPLIGV-YFALCLSLMVGSLLETIFITH 346
>AB065887-1|BAC06104.1| 324|Homo sapiens seven transmembrane helix
receptor protein.
Length = 324
Score = 33.9 bits (74), Expect = 0.61
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Frame = -1
Query: 615 LVFYVPMLVLNTFVLI--SFWTEPLTMSRIWFYVAC-----VVSICFGLCYIDYLIPIHA 457
++F+ M +L +++L+ + + P R + C VVS+ +G + Y+ P +
Sbjct: 216 VLFFTSMYILRSYILLLTAVFQVPSAAGRRKAFSTCGSHLVVVSLFYGTVMVMYVSPTYG 275
Query: 456 IPTIMVLYVTVLFGLMT 406
IPT++ +T+++ + T
Sbjct: 276 IPTLLQKILTLVYSVTT 292
>X15376-1|CAA33437.1| 467|Homo sapiens GABA-A receptor gamma 2
subunit protein.
Length = 467
Score = 32.3 bits (70), Expect = 1.9
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Frame = -1
Query: 711 IDLINSEEVLNTHLSDKMIITV--DLAKNPDLYNLVFYVPMLVLNTFVLISFW-TEPLTM 541
+ L N+ EV+ T D ++++V DL++ + + Y+P ++ +SFW +
Sbjct: 243 VGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVP 302
Query: 540 SRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLF 418
+R + V+++ +P + T M L+V+V F
Sbjct: 303 ARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCF 343
>BC074795-1|AAH74795.1| 467|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, gamma 2 protein.
Length = 467
Score = 32.3 bits (70), Expect = 1.9
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Frame = -1
Query: 711 IDLINSEEVLNTHLSDKMIITV--DLAKNPDLYNLVFYVPMLVLNTFVLISFW-TEPLTM 541
+ L N+ EV+ T D ++++V DL++ + + Y+P ++ +SFW +
Sbjct: 243 VGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVP 302
Query: 540 SRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLF 418
+R + V+++ +P + T M L+V+V F
Sbjct: 303 ARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCF 343
>BC069348-1|AAH69348.1| 467|Homo sapiens gamma-aminobutyric acid A
receptor, gamma 2, isoform 2 precursor protein.
Length = 467
Score = 32.3 bits (70), Expect = 1.9
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Frame = -1
Query: 711 IDLINSEEVLNTHLSDKMIITV--DLAKNPDLYNLVFYVPMLVLNTFVLISFW-TEPLTM 541
+ L N+ EV+ T D ++++V DL++ + + Y+P ++ +SFW +
Sbjct: 243 VGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVP 302
Query: 540 SRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLF 418
+R + V+++ +P + T M L+V+V F
Sbjct: 303 ARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCF 343
>BC059389-1|AAH59389.1| 475|Homo sapiens gamma-aminobutyric acid
(GABA) A receptor, gamma 2 protein.
Length = 475
Score = 32.3 bits (70), Expect = 1.9
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Frame = -1
Query: 711 IDLINSEEVLNTHLSDKMIITV--DLAKNPDLYNLVFYVPMLVLNTFVLISFW-TEPLTM 541
+ L N+ EV+ T D ++++V DL++ + + Y+P ++ +SFW +
Sbjct: 243 VGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVP 302
Query: 540 SRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLF 418
+R + V+++ +P + T M L+V+V F
Sbjct: 303 ARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCF 343
>AF165124-1|AAD50273.1| 467|Homo sapiens gamma-aminobutyric acid A
receptor gamma 2 protein.
Length = 467
Score = 32.3 bits (70), Expect = 1.9
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Frame = -1
Query: 711 IDLINSEEVLNTHLSDKMIITV--DLAKNPDLYNLVFYVPMLVLNTFVLISFW-TEPLTM 541
+ L N+ EV+ T D ++++V DL++ + + Y+P ++ +SFW +
Sbjct: 243 VGLRNTTEVVKTTSGDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVP 302
Query: 540 SRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLF 418
+R + V+++ +P + T M L+V+V F
Sbjct: 303 ARTSLGITTVLTMTTLSTIARKSLPKVSYVTAMDLFVSVCF 343
>AF137396-7|AAG41681.1| 326|Homo sapiens HOR5'Beta7 protein.
Length = 326
Score = 31.5 bits (68), Expect = 3.2
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = -1
Query: 672 LSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEPLTMSRIWFYVACVVSICFG 493
+S I + + NP L+ ++Y+ L+ T + + T P TM WF SI FG
Sbjct: 51 ISGNCFILIIIKTNPRLHTPMYYLLSLLALTDLGLCVSTLPTTMGIFWFNSQ---SIYFG 107
Query: 492 LCYIDYLIPIHA 457
C I + IH+
Sbjct: 108 ACQIQ-MFCIHS 118
>M34517-1|AAA99887.1| 108|Homo sapiens omega protein protein.
Length = 108
Score = 31.1 bits (67), Expect = 4.3
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +3
Query: 546 SVAPSRTILR----RTCLGPT*ARRTPGCTSQGFWLSPQ**SSCHLNG 677
SV SR+ LR R L P+ R P C +GFW PQ S C++ G
Sbjct: 55 SVGSSRSSLRSLWGRLLLQPSPQRAPPRCWPRGFWSEPQ--SLCYVFG 100
>AJ318022-1|CAC51026.1| 214|Homo sapiens immunoglobulin lambda-3
surrogate light chain protein.
Length = 214
Score = 31.1 bits (67), Expect = 4.3
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +3
Query: 546 SVAPSRTILR----RTCLGPT*ARRTPGCTSQGFWLSPQ**SSCHLNG 677
SV SR+ LR R L P+ R P C +GFW PQ S C++ G
Sbjct: 55 SVGSSRSSLRSLWGRLLLQPSPQRADPRCWPRGFWSEPQ--SLCYVFG 100
>X63753-1|CAA45282.1| 1523|Homo sapiens son-a protein.
Length = 1523
Score = 30.7 bits (66), Expect = 5.7
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Frame = +3
Query: 291 KANRRPLVQRRRSGLVSLLTTSPTPHRSSILGARWPSQQSLVQTRPSRTAPLW*VSHESV 470
+ R V RRRS +S S TP R S R PS++S +R SRT S S
Sbjct: 929 RRRRSRSVGRRRSFSISPSRRSRTPSRRS----RTPSRRSRTPSRRSRTP-----SRRSR 979
Query: 471 LNNRYSRVQNR*TPHR---LRRTISLT-LSVAPSRTILRR 578
+R SR +R R RR+ S++ + + SRT LRR
Sbjct: 980 TPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRR 1019
>X63071-1|CAA44793.1| 1179|Homo sapiens DBP-5 protein protein.
Length = 1179
Score = 30.7 bits (66), Expect = 5.7
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Frame = +3
Query: 291 KANRRPLVQRRRSGLVSLLTTSPTPHRSSILGARWPSQQSLVQTRPSRTAPLW*VSHESV 470
+ R V RRRS +S S TP R S R PS++S +R SRT S S
Sbjct: 792 RRRRSRSVGRRRSFSISPSRRSRTPSRRS----RTPSRRSRTPSRRSRTP-----SRRSR 842
Query: 471 LNNRYSRVQNR*TPHR---LRRTISLT-LSVAPSRTILRR 578
+R SR +R R RR+ S++ + + SRT LRR
Sbjct: 843 TPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRR 882
>M36428-1|AAA36624.1| 483|Homo sapiens protein ( Human son3 protein
gene, partial cds. ).
Length = 483
Score = 30.7 bits (66), Expect = 5.7
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Frame = +3
Query: 291 KANRRPLVQRRRSGLVSLLTTSPTPHRSSILGARWPSQQSLVQTRPSRTAPLW*VSHESV 470
+ R V RRRS +S S TP R S R PS++S +R SRT S S
Sbjct: 244 RRRRSRSVGRRRSFSISPSRRSRTPSRRS----RTPSRRSRTPSRRSRTP-----SRRSR 294
Query: 471 LNNRYSRVQNR*TPHR---LRRTISLT-LSVAPSRTILRR 578
+R SR +R R RR+ S++ + + SRT LRR
Sbjct: 295 TPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRR 334
>BC101185-1|AAI01186.1| 374|Homo sapiens HTR3E protein protein.
Length = 374
Score = 30.7 bits (66), Expect = 5.7
Identities = 23/106 (21%), Positives = 44/106 (41%)
Frame = -1
Query: 690 EVLNTHLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEPLTMSRIWFYVACV 511
E+L + + V + + P LY + VP L +SF+ + +R+ F + +
Sbjct: 145 ELLGLSKATAKLSRVAIRRRPSLYVINLLVPSGFLVAIDALSFYLPVKSGNRVPFKITLL 204
Query: 510 VSICFGLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLISN 373
+ L + L+P P I V Y + LM + + I++
Sbjct: 205 LGYNVFLLMMSDLLPTSGTPLIGV-YFALCLSLMVGSLLETIFITH 249
>AY026895-1|AAK07692.1| 2386|Homo sapiens NREBP protein.
Length = 2386
Score = 30.7 bits (66), Expect = 5.7
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Frame = +3
Query: 291 KANRRPLVQRRRSGLVSLLTTSPTPHRSSILGARWPSQQSLVQTRPSRTAPLW*VSHESV 470
+ R V RRRS +S S TP R S R PS++S +R SRT S S
Sbjct: 1896 RRRRSRSVGRRRSFSISPSRRSRTPSRRS----RTPSRRSRTPSRRSRTP-----SRRSR 1946
Query: 471 LNNRYSRVQNR*TPHR---LRRTISLT-LSVAPSRTILRR 578
+R SR +R R RR+ S++ + + SRT LRR
Sbjct: 1947 TPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRR 1986
>AF380184-1|AAL34502.1| 2426|Homo sapiens SON DNA binding protein
isoform F protein.
Length = 2426
Score = 30.7 bits (66), Expect = 5.7
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Frame = +3
Query: 291 KANRRPLVQRRRSGLVSLLTTSPTPHRSSILGARWPSQQSLVQTRPSRTAPLW*VSHESV 470
+ R V RRRS +S S TP R S R PS++S +R SRT S S
Sbjct: 1936 RRRRSRSVGRRRSFSISPSRRSRTPSRRS----RTPSRRSRTPSRRSRTP-----SRRSR 1986
Query: 471 LNNRYSRVQNR*TPHR---LRRTISLT-LSVAPSRTILRR 578
+R SR +R R RR+ S++ + + SRT LRR
Sbjct: 1987 TPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRR 2026
>AF380183-1|AAL34501.1| 2108|Homo sapiens SON DNA binding protein
isoform E protein.
Length = 2108
Score = 30.7 bits (66), Expect = 5.7
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Frame = +3
Query: 291 KANRRPLVQRRRSGLVSLLTTSPTPHRSSILGARWPSQQSLVQTRPSRTAPLW*VSHESV 470
+ R V RRRS +S S TP R S R PS++S +R SRT S S
Sbjct: 1936 RRRRSRSVGRRRSFSISPSRRSRTPSRRS----RTPSRRSRTPSRRSRTP-----SRRSR 1986
Query: 471 LNNRYSRVQNR*TPHR---LRRTISLT-LSVAPSRTILRR 578
+R SR +R R RR+ S++ + + SRT LRR
Sbjct: 1987 TPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRR 2026
>AF380181-1|AAL34499.1| 2325|Homo sapiens SON DNA binding protein
isoform C protein.
Length = 2325
Score = 30.7 bits (66), Expect = 5.7
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Frame = +3
Query: 291 KANRRPLVQRRRSGLVSLLTTSPTPHRSSILGARWPSQQSLVQTRPSRTAPLW*VSHESV 470
+ R V RRRS +S S TP R S R PS++S +R SRT S S
Sbjct: 1936 RRRRSRSVGRRRSFSISPSRRSRTPSRRS----RTPSRRSRTPSRRSRTP-----SRRSR 1986
Query: 471 LNNRYSRVQNR*TPHR---LRRTISLT-LSVAPSRTILRR 578
+R SR +R R RR+ S++ + + SRT LRR
Sbjct: 1987 TPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRR 2026
>AF380180-1|AAL34498.1| 2303|Homo sapiens SON DNA binding protein
isoform B protein.
Length = 2303
Score = 30.7 bits (66), Expect = 5.7
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Frame = +3
Query: 291 KANRRPLVQRRRSGLVSLLTTSPTPHRSSILGARWPSQQSLVQTRPSRTAPLW*VSHESV 470
+ R V RRRS +S S TP R S R PS++S +R SRT S S
Sbjct: 1936 RRRRSRSVGRRRSFSISPSRRSRTPSRRS----RTPSRRSRTPSRRSRTP-----SRRSR 1986
Query: 471 LNNRYSRVQNR*TPHR---LRRTISLT-LSVAPSRTILRR 578
+R SR +R R RR+ S++ + + SRT LRR
Sbjct: 1987 TPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRR 2026
>AF380179-1|AAL34497.1| 2140|Homo sapiens SON DNA binding protein
isoform A protein.
Length = 2140
Score = 30.7 bits (66), Expect = 5.7
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Frame = +3
Query: 291 KANRRPLVQRRRSGLVSLLTTSPTPHRSSILGARWPSQQSLVQTRPSRTAPLW*VSHESV 470
+ R V RRRS +S S TP R S R PS++S +R SRT S S
Sbjct: 1617 RRRRSRSVGRRRSFSISPSRRSRTPSRRS----RTPSRRSRTPSRRSRTP-----SRRSR 1667
Query: 471 LNNRYSRVQNR*TPHR---LRRTISLT-LSVAPSRTILRR 578
+R SR +R R RR+ S++ + + SRT LRR
Sbjct: 1668 TPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRR 1707
>AB028942-1|BAA82971.2| 2309|Homo sapiens KIAA1019 protein protein.
Length = 2309
Score = 30.7 bits (66), Expect = 5.7
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Frame = +3
Query: 291 KANRRPLVQRRRSGLVSLLTTSPTPHRSSILGARWPSQQSLVQTRPSRTAPLW*VSHESV 470
+ R V RRRS +S S TP R S R PS++S +R SRT S S
Sbjct: 1942 RRRRSRSVGRRRSFSISPSRRSRTPSRRS----RTPSRRSRTPSRRSRTP-----SRRSR 1992
Query: 471 LNNRYSRVQNR*TPHR---LRRTISLT-LSVAPSRTILRR 578
+R SR +R R RR+ S++ + + SRT LRR
Sbjct: 1993 TPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRR 2032
>AJ318021-1|CAC50882.1| 215|Homo sapiens immunoglobulin lambda-3
surrogate light chain protein.
Length = 215
Score = 30.3 bits (65), Expect = 7.5
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Frame = +3
Query: 546 SVAPSRTILR-----RTCLGPT*ARRTPGCTSQGFWLSPQ**SSCHLNG 677
SV SR+ LR R L P+ R P C +GFW PQ S C++ G
Sbjct: 55 SVGSSRSSLRSLWGSRLLLQPSPQRADPRCWPRGFWSEPQ--SLCYVFG 101
>AF139897-1|AAD50078.1| 344|Homo sapiens BASS1 protein.
Length = 344
Score = 30.3 bits (65), Expect = 7.5
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +3
Query: 312 VQRRRSGLVSLLTTSPTPHRSSILGARWPSQQSLVQTRPSRTAPLW*VSHESVLNNRYSR 491
V RRRS +S S TP R S R PS++S +R SRT S S +R SR
Sbjct: 5 VGRRRSFSISPSRRSRTPSRRS----RTPSRRSRTPSRRSRTP-----SRRSRTPSRRSR 55
Query: 492 VQNR*TPHR---LRRTISLT-LSVAPSRTILRR 578
+R R RR+ S++ + + SRT LRR
Sbjct: 56 TPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRR 88
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,972,805
Number of Sequences: 237096
Number of extensions: 2126001
Number of successful extensions: 4912
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 4754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4910
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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