Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_L20
(735 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045471-1|AAF18569.1| 388|Drosophila melanogaster DNtR protein. 40 0.004
AE013599-3342|AAF46805.1| 585|Drosophila melanogaster CG6698-PA... 40 0.004
AY005148-1|AAF89090.1| 441|Drosophila melanogaster nicotinic ac... 38 0.019
AJ318761-1|CAC48166.1| 441|Drosophila melanogaster nicotinic ac... 38 0.019
AE014134-120|AAF51485.1| 441|Drosophila melanogaster CG11822-PA... 38 0.019
BT025187-1|ABF02289.1| 472|Drosophila melanogaster IP15591p pro... 29 8.7
BT023826-1|AAZ86747.1| 534|Drosophila melanogaster RE59757p pro... 29 8.7
AY061622-1|AAL29170.1| 327|Drosophila melanogaster SD09326p pro... 29 8.7
AE014297-2610|AAF55617.2| 534|Drosophila melanogaster CG31043-P... 29 8.7
AE014297-2609|AAZ52530.1| 1044|Drosophila melanogaster CG31043-P... 29 8.7
AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-P... 29 8.7
AE014134-121|AAN10500.1| 327|Drosophila melanogaster CG11822-PB... 29 8.7
>AF045471-1|AAF18569.1| 388|Drosophila melanogaster DNtR protein.
Length = 388
Score = 39.9 bits (89), Expect = 0.004
Identities = 21/98 (21%), Positives = 46/98 (46%)
Frame = -1
Query: 672 LSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEPLTMSRIWFYVACVVSICFG 493
++ + I L +N Y VFY+P++ F+++SF S + +A +++ +G
Sbjct: 219 MTGDVAIEFTLQRNRSFYMTVFYLPLIACQMFLILSFVLRSTRRSSL-ILIALLIA-AWG 276
Query: 492 LCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLI 379
L Y+ H +P +M Y ++ + ++ +I
Sbjct: 277 LMYMTRYASPHYVPPMMTAYKVIMMTTTYCYILHICII 314
>AE013599-3342|AAF46805.1| 585|Drosophila melanogaster CG6698-PA
protein.
Length = 585
Score = 39.9 bits (89), Expect = 0.004
Identities = 21/98 (21%), Positives = 46/98 (46%)
Frame = -1
Query: 672 LSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEPLTMSRIWFYVACVVSICFG 493
++ + I L +N Y VFY+P++ F+++SF S + +A +++ +G
Sbjct: 416 MTGDVAIEFTLQRNRSFYMTVFYLPLIACQMFLILSFVLRSTRRSSL-ILIALLIA-AWG 473
Query: 492 LCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLI 379
L Y+ H +P +M Y ++ + ++ +I
Sbjct: 474 LMYMTRYASPHYVPPMMTAYKVIMMTTTYCYILHICII 511
>AY005148-1|AAF89090.1| 441|Drosophila melanogaster nicotinic
acetylcholine receptorbeta subunit protein.
Length = 441
Score = 37.5 bits (83), Expect = 0.019
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = -1
Query: 660 MIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEP-LTMSRIWFYVACVVSICFGLCY 484
M T+ + +Y V Y P + L +FW P + +I ++ I L Y
Sbjct: 238 MEYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMY 297
Query: 483 IDYLIPI--HAIPTIMVLYVTVLFGLMTAVMANVLLI 379
L+P+ + P +++ Y T L L + + VL++
Sbjct: 298 FAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLVL 334
>AJ318761-1|CAC48166.1| 441|Drosophila melanogaster nicotinic
acetylcholine receptorbeta 3 (Dbeta3) subunit protein.
Length = 441
Score = 37.5 bits (83), Expect = 0.019
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = -1
Query: 660 MIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEP-LTMSRIWFYVACVVSICFGLCY 484
M T+ + +Y V Y P + L +FW P + +I ++ I L Y
Sbjct: 238 MEYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMY 297
Query: 483 IDYLIPI--HAIPTIMVLYVTVLFGLMTAVMANVLLI 379
L+P+ + P +++ Y T L L + + VL++
Sbjct: 298 FAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLVL 334
>AE014134-120|AAF51485.1| 441|Drosophila melanogaster CG11822-PA,
isoform A protein.
Length = 441
Score = 37.5 bits (83), Expect = 0.019
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = -1
Query: 660 MIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEP-LTMSRIWFYVACVVSICFGLCY 484
M T+ + +Y V Y P + L +FW P + +I ++ I L Y
Sbjct: 238 MEYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMY 297
Query: 483 IDYLIPI--HAIPTIMVLYVTVLFGLMTAVMANVLLI 379
L+P+ + P +++ Y T L L + + VL++
Sbjct: 298 FAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLVL 334
>BT025187-1|ABF02289.1| 472|Drosophila melanogaster IP15591p
protein.
Length = 472
Score = 28.7 bits (61), Expect = 8.7
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +3
Query: 306 PLVQRRRSGLVSLLTTSPTPHRS-SILGARWPSQQ--SLVQTRPSRTAPLW*VSHESVLN 476
P ++ V L+TSPT H+S S+ +R PSQQ +L + + +P S + V
Sbjct: 78 PAPMKKLKHHVEFLSTSPTRHQSQSLPNSRHPSQQRPALGRIASAPQSPTA-GSSKVVSG 136
Query: 477 NRYSRVQNR*TPHRLRRTISLTL 545
+ + + N + LR+ SL L
Sbjct: 137 HEFDSISNITLSNALRQLASLVL 159
>BT023826-1|AAZ86747.1| 534|Drosophila melanogaster RE59757p
protein.
Length = 534
Score = 28.7 bits (61), Expect = 8.7
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +3
Query: 306 PLVQRRRSGLVSLLTTSPTPHRS-SILGARWPSQQ--SLVQTRPSRTAPLW*VSHESVLN 476
P ++ V L+TSPT H+S S+ +R PSQQ +L + + +P S + V
Sbjct: 78 PAPMKKLKHHVEFLSTSPTRHQSQSLPNSRHPSQQRPALGRIASAPQSPTA-GSSKVVSG 136
Query: 477 NRYSRVQNR*TPHRLRRTISLTL 545
+ + + N + LR+ SL L
Sbjct: 137 HEFDSISNITLSNALRQLASLVL 159
>AY061622-1|AAL29170.1| 327|Drosophila melanogaster SD09326p
protein.
Length = 327
Score = 28.7 bits (61), Expect = 8.7
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = -1
Query: 660 MIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEP-LTMSRIWFYVACVVSICFGLCY 484
M T+ + +Y V Y P + L +FW P + +I ++ I L Y
Sbjct: 238 MEYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMY 297
Query: 483 IDYLIPIHAIPTIMV 439
L+P+ + T +V
Sbjct: 298 FAQLLPVLSNNTPLV 312
>AE014297-2610|AAF55617.2| 534|Drosophila melanogaster CG31043-PB,
isoform B protein.
Length = 534
Score = 28.7 bits (61), Expect = 8.7
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +3
Query: 306 PLVQRRRSGLVSLLTTSPTPHRS-SILGARWPSQQ--SLVQTRPSRTAPLW*VSHESVLN 476
P ++ V L+TSPT H+S S+ +R PSQQ +L + + +P S + V
Sbjct: 78 PAPMKKLKHHVEFLSTSPTRHQSQSLPNSRHPSQQRPALGRIASAPQSPTA-GSSKVVSG 136
Query: 477 NRYSRVQNR*TPHRLRRTISLTL 545
+ + + N + LR+ SL L
Sbjct: 137 HEFDSISNITLSNALRQLASLVL 159
>AE014297-2609|AAZ52530.1| 1044|Drosophila melanogaster CG31043-PC,
isoform C protein.
Length = 1044
Score = 28.7 bits (61), Expect = 8.7
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +3
Query: 306 PLVQRRRSGLVSLLTTSPTPHRS-SILGARWPSQQ--SLVQTRPSRTAPLW*VSHESVLN 476
P ++ V L+TSPT H+S S+ +R PSQQ +L + + +P S + V
Sbjct: 78 PAPMKKLKHHVEFLSTSPTRHQSQSLPNSRHPSQQRPALGRIASAPQSPTA-GSSKVVSG 136
Query: 477 NRYSRVQNR*TPHRLRRTISLTL 545
+ + + N + LR+ SL L
Sbjct: 137 HEFDSISNITLSNALRQLASLVL 159
>AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-PA,
isoform A protein.
Length = 1788
Score = 28.7 bits (61), Expect = 8.7
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +3
Query: 306 PLVQRRRSGLVSLLTTSPTPHRS-SILGARWPSQQ--SLVQTRPSRTAPLW*VSHESVLN 476
P ++ V L+TSPT H+S S+ +R PSQQ +L + + +P S + V
Sbjct: 78 PAPMKKLKHHVEFLSTSPTRHQSQSLPNSRHPSQQRPALGRIASAPQSPTA-GSSKVVSG 136
Query: 477 NRYSRVQNR*TPHRLRRTISLTL 545
+ + + N + LR+ SL L
Sbjct: 137 HEFDSISNITLSNALRQLASLVL 159
>AE014134-121|AAN10500.1| 327|Drosophila melanogaster CG11822-PB,
isoform B protein.
Length = 327
Score = 28.7 bits (61), Expect = 8.7
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = -1
Query: 660 MIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEP-LTMSRIWFYVACVVSICFGLCY 484
M T+ + +Y V Y P + L +FW P + +I ++ I L Y
Sbjct: 238 MEYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMY 297
Query: 483 IDYLIPIHAIPTIMV 439
L+P+ + T +V
Sbjct: 298 FAQLLPVLSNNTPLV 312
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,900,277
Number of Sequences: 53049
Number of extensions: 658759
Number of successful extensions: 1896
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1896
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3314233461
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -