Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_L20
(735 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 33 0.21
U39849-1|AAA81045.2| 332|Caenorhabditis elegans Serpentine rece... 31 1.1
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 29 3.4
AC006808-1|AAF60813.1| 486|Caenorhabditis elegans Hypothetical ... 29 3.4
Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical pr... 29 4.5
AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical ... 29 4.5
AF024501-8|AAN65318.1| 550|Caenorhabditis elegans Hypothetical ... 29 4.5
Z30317-4|CAB54306.1| 378|Caenorhabditis elegans Hypothetical pr... 28 6.0
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = -1
Query: 666 DKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEPLTMSRIWFYVACVVSICFGLC 487
+ + T+ L + Y+ P+L+ V++ F P T ++ ++ ++IC L
Sbjct: 214 EDITFTLHLRRRTLYYSFNLIAPVLLTMILVILGFTVSPETCEKVGLQISVSLAICIFLT 273
Query: 486 YIDYLIP--IHAIPTIMVLYVTVLF 418
+ L P A+P + V + T F
Sbjct: 274 IMSELTPQTSEAVPLLGVFFHTCNF 298
>U39849-1|AAA81045.2| 332|Caenorhabditis elegans Serpentine
receptor, class h protein39 protein.
Length = 332
Score = 30.7 bits (66), Expect = 1.1
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Frame = -1
Query: 648 VDLAKNPDLY-NLVFYVPMLVL---NTFVLISFWTEPLTMSRIWFYVACVVSICF----- 496
V L +NP ++ N F++ +L L + + + + P M + C++++ F
Sbjct: 7 VSLLENPVIFRNFCFFLTILELFPTSYAMYLLIYHSPTQMKDM---KRCLINLAFWTRAM 63
Query: 495 GLCYIDYLIPIHAIPTIMVLYVTV--LFGLMTAVMANVLLI 379
L Y LIP IPT++VL V + L GL T + VL+I
Sbjct: 64 DLMYSFLLIPYFFIPTLVVLPVGLFSLIGLKTEIQLVVLVI 104
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 29.1 bits (62), Expect = 3.4
Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Frame = -1
Query: 717 EIIDLINSEEVL--NTHLSDKMII-TVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEPL 547
E+I+L N + L N ++ + + +A+NP Y + P V+N+ ++ + +
Sbjct: 226 ELINLTNRVDFLTYNDRFDVELAVYEIKIARNPLYYFYMIVFPSFVINSVSIVGVFIKGA 285
Query: 546 -TMSRIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLLIS 376
MSR+ + ++++ F L + IP ++ +Y+ V +M + V +I+
Sbjct: 286 DKMSRLNVGLTNIMTMTFILGVMSDKIPRTGNVPLLGIYIIVNLLIMLVAIIIVTIIT 343
>AC006808-1|AAF60813.1| 486|Caenorhabditis elegans Hypothetical
protein Y58G8A.1 protein.
Length = 486
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = -1
Query: 648 VDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEPLTMSRIWFYVACVVSICFGLCYIDYLI 469
+ L ++ ++L +PM+ + +L+ FW E + + + +G + +
Sbjct: 251 ITLKRHLPYFSLTIVMPMVSTSLMILLGFWIENFDFNVFLITLNIALQATYGSNILSRMP 310
Query: 468 P-IHAIPTIMVLYVTVLFGLMTAVMANVLLISNF 370
P P I+ LY L L++A ++++SNF
Sbjct: 311 PGSGRTPKIVHLYSIGL--LISAFQVVLIVMSNF 342
>Z49128-5|CAA88955.1| 676|Caenorhabditis elegans Hypothetical
protein M03C11.5 protein.
Length = 676
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 249 LLGPSNPHWRLSSWKANRRPLVQRRRSGLVSLLTTSPTP-HRSSILGARWPSQQSLVQT 422
L+GP+ R+ +ANR LVSL T TP H+ +I+ P QSL T
Sbjct: 440 LMGPARTGGRIPDEEANRNTAYHEAGHTLVSLYTKDATPLHKVTII----PRGQSLGHT 494
>AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical
protein Y71A12B.4 protein.
Length = 1913
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 498 FGLCYIDYLIPIHAIPTIMVLYVTVLFGLMTAVMANVLL 382
FGL D + P+H +P + + +LFG+ V VL+
Sbjct: 1688 FGLVEPDSMPPLHLVPDFAKIILKLLFGIYMMVTLIVLI 1726
>AF024501-8|AAN65318.1| 550|Caenorhabditis elegans Hypothetical
protein F39E9.12 protein.
Length = 550
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = -1
Query: 690 EVLNTHLSDKMIITVDLAKNPDLYNLVFYVPMLVLNTFVLISFWTEPLTMSRIWFYVACV 511
E+L L+ +I+ LA ++N + + + L F+LI+ P + WF++ V
Sbjct: 303 EILIIVLTGLIILGSFLAAVDFIFNNFYSIVIFTLPVFILIAVIFYPPLTTYFWFWIKDV 362
Query: 510 VSICFGLCYIDY 475
+ F I +
Sbjct: 363 AEVVFEYALIPW 374
>Z30317-4|CAB54306.1| 378|Caenorhabditis elegans Hypothetical
protein T16G12.8 protein.
Length = 378
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/61 (24%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = -1
Query: 537 RIWFYVACVVSICFGLCYIDYLIPIHAIPTIMVLYVTVLF-GL-MTAVMANVLLISNFGE 364
R+WF++ + SI F + ++YL+ + + + + ++F G+ + A ++N L + +F +
Sbjct: 220 RVWFFMFVIGSIAFDVTKLEYLVQYGLVRHTIHIPICLIFNGIPLYASVSNNLSVFSFIK 279
Query: 363 A 361
A
Sbjct: 280 A 280
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,812,308
Number of Sequences: 27780
Number of extensions: 334148
Number of successful extensions: 1069
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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