Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_L13
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.97 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.9  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.0  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    21   9.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.0  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    21   9.0  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -2

Query: 625 PPCIGFRS--TLPLLYITFV---PCSFSHISRPVQPCCCGCSASRDVNLYIFT 482
           PP +G++   + P   +TF    P + + I  PV+PC   C  + D    +++
Sbjct: 199 PPLVGWKDKRSHPAYNMTFAQNGPFNTTTIFVPVKPCPWICELTNDAGYVVYS 251


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 140 LTPQAPGTLYPGGSTV 187
           +TP++PG  +PG S +
Sbjct: 911 VTPRSPGRAWPGDSDI 926


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 349 FFCDFYRHISFICA 308
           FFCD    +S +CA
Sbjct: 57  FFCDMSPSLSLLCA 70


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 351 CSLLSPKIKHMCNKLIKY 404
           C+  + K KH  NK++ Y
Sbjct: 72  CNKCNEKQKHTANKVVNY 89


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 396 LIYYTYVLFSVTGENISFAISIDISV 319
           L   T+ L S +GE ++ +ISI IS+
Sbjct: 261 LTVLTFYLPSDSGEKVTLSISILISL 286


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 396 LIYYTYVLFSVTGENISFAISIDISV 319
           L   T+ L S +GE ++ +ISI IS+
Sbjct: 261 LTVLTFYLPSDSGEKVTLSISILISL 286


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 351 CSLLSPKIKHMCNKLIKY 404
           C+  + K KH  NK++ Y
Sbjct: 72  CNKCNEKQKHTANKVVNY 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,650
Number of Sequences: 438
Number of extensions: 3937
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)