Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_L10
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    27   3.8  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   6.7  
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom...    26   6.7  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    25   8.8  

>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 669 GYFTMVTDLPKYMTDVLKFNIKSTGILSALPYVAMWIASFFFGLVCDF 526
           GY   + +  K+MTDVL  ++ S G  S +      ++S   G   DF
Sbjct: 125 GYRLAIREAVKFMTDVLSCSVDSLGKESLINVAKTSMSSKIIGNDSDF 172


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -1

Query: 702 ALIIAGIGHDWGYFTMVTDLPKYMTDVLKFNIKSTGILSALPYVAMWIASFFFGLVC 532
           +LIIA +   W YFT      KY+T  +  NI         P++A   +S FF + C
Sbjct: 283 SLIIAPL---WIYFTF-----KYITTCIHANIDIVHFYLETPFLAGIFSSIFFWVWC 331


>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 681 GHDWGYFTMVTDLPKYMTDVLKFNIKST 598
           G  W +++   + P+   D  K N KST
Sbjct: 377 GRKWEFYSYAKEFPELFPDAYKLNEKST 404


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
 Frame = +1

Query: 280 CNTVNHSRGGTSIVGRNIKWIDFHTTVVGTHESHCKH--EPKHSQCGITTRV*GQNNTNS 453
           C T NH R   +I  R ++   FH      +  +C +  E   + CG   R   +  T +
Sbjct: 292 CYTHNHHRRIHNIKARLLETHIFHPNTQNHYGGYCMNQAEETFASCGYLKRY-QKTKTKT 350

Query: 454 RTSRSDGSVNFSCILNTVVTSFNT 525
           R   +    N S   N   T  NT
Sbjct: 351 RAKSTWKIANKSVYSNLAPTLKNT 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,346,073
Number of Sequences: 5004
Number of extensions: 75863
Number of successful extensions: 189
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)