Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_L09
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    27   0.17 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.93 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   6.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   6.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   6.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   6.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   6.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   8.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -1

Query: 229  GDLTVKELVREAARIIYLVHDELKDKQFELELSWVSKDTKGRHELVPRELAT-EAENQAK 53
            GD T+ E V +  + I   H E+ DKQ E  +  +  + +   ++    L T E  N+++
Sbjct: 1073 GDCTMAEDVYQTLKHIIQTHGEMTDKQVEAYMLSLRDENRYHEDIFGITLRTAEVHNRSR 1132

Query: 52   Q 50
            +
Sbjct: 1133 E 1133


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 385 PYGCSVVMGTWTDYEGPQMY 326
           P GC+VV+GT+  +  P +Y
Sbjct: 435 PAGCTVVIGTFKLHRQPHIY 454


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 626 NSKYHSIFSSEANNCSRIFYSL 691
           N KY+   ++  NNC +++Y++
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNI 116


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 626 NSKYHSIFSSEANNCSRIFYSL 691
           N KY+   ++  NNC +++Y++
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNI 116


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 626 NSKYHSIFSSEANNCSRIFYSL 691
           N KY+   ++  NNC +++Y++
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNI 116


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 626 NSKYHSIFSSEANNCSRIFYSL 691
           N KY+   ++  NNC +++Y++
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNI 116


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 534 SPATAMPTCSSIWNILLFAPGSYNFDVINFSTANT 638
           S  T+ P   S   I    PGS+NF +   +T +T
Sbjct: 286 SEHTSTPNFLSEAKIFPPTPGSFNFSMAALATEHT 320


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = +2

Query: 626 NSKYHSIFSSEANNCSRIFYSLCSI 700
           N+ Y++ ++   NNC +++Y++ +I
Sbjct: 340 NNNYNNNYN---NNCKKLYYNIINI 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,479
Number of Sequences: 438
Number of extensions: 5326
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)