Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_L08
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 190 9e-50
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 190 9e-50
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 28 1.0
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 28 1.0
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 2.4
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 26 3.2
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 26 3.2
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 3.2
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 25 5.6
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 5.6
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 5.6
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 5.6
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 5.6
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 7.3
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 25 7.3
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 7.3
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 25 9.7
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 25 9.7
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 9.7
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 9.7
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.7
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 9.7
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 190 bits (464), Expect = 9e-50
Identities = 91/134 (67%), Positives = 103/134 (76%)
Frame = -3
Query: 485 MTNSKGYRRGTRDLFXRRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 306
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 305 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 126
TG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 125 AAGKTVNLKRQPAP 84
A GKTV L+RQPAP
Sbjct: 121 AQGKTVQLRRQPAP 134
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 190 bits (464), Expect = 9e-50
Identities = 91/134 (67%), Positives = 103/134 (76%)
Frame = -3
Query: 485 MTNSKGYRRGTRDLFXRRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 306
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 305 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 126
TG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 125 AAGKTVNLKRQPAP 84
A GKTV L+RQPAP
Sbjct: 121 AQGKTVQLRRQPAP 134
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 373 SPTLYTFMYVESGIVPCVRNLRXNKSLVPRR*PLEFVIF 489
S L+ F+ + IVPC+ + + ++P R EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.9 bits (59), Expect = 1.0
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = -1
Query: 226 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPTKAAHIVSGTEK 47
SAS S S++S+ S D ++ +R R RKP + +P+ + + P + + K
Sbjct: 56 SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114
Query: 46 PVL 38
PV+
Sbjct: 115 PVI 117
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = +1
Query: 475 EFVIFEPCVTKLDG 516
EFVIFE C+T+++G
Sbjct: 726 EFVIFEACLTRIEG 739
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +3
Query: 114 LAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESM 278
+A SLG Q +L +LSA G M D+ + PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 105 PEETASSPLKLPTSSVELRNPSYLRR 28
P T+ LKLP SS +NPS RR
Sbjct: 655 PITTSPQKLKLPRSSSPCKNPSPTRR 680
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = -2
Query: 414 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 310
+ L H SW + R+ C +KGY PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 144 ATEGSQGCRQDRQPEETASSPLKLP 70
+ EG+Q D+ EE +PLKLP
Sbjct: 351 SVEGNQDEESDQDDEEKIYNPLKLP 375
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.4 bits (53), Expect = 5.6
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = +3
Query: 81 VGSWLSLQVDGLAGSLGF 134
+ WL+++ DG++G +GF
Sbjct: 1082 INRWLAIRTDGISGLVGF 1099
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 5.6
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = -3
Query: 539 GRPMLFLDPSSFVTQGSKMTNSKGYRRGTRDLFXRRFRTHGTIPLSTYMKVY 384
GRP PS ++ S + + G + T D F RRF TIP + +KVY
Sbjct: 355 GRPRRSPSPSH-LSIPSTLPPADGVPKPTPDGFPRRFERDPTIPPDS-IKVY 404
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 219 DALRYNPSANTLVDNHTES 275
D R N S N ++DNHT++
Sbjct: 29 DPARKNESTNDVIDNHTDT 47
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.4 bits (53), Expect = 5.6
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Frame = -1
Query: 187 SADKTSLRESKRMRGY*RKPRLPARPS-T*RDSQLPTKAAHIVSGTEKPVLLAPIP 23
S+ T + + M KPRLP RPS T + P + +S P+ P P
Sbjct: 340 SSPYTHIAPASEMSLIPEKPRLPPRPSHTLSELSSPALTSENLSSKPSPLFPPPPP 395
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 188 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 93
K DF KR E +R+ +E A KTV L Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 102 EETASSPLKLPTSSVELRNPSYL 34
+ET SPLKLPT + + SY+
Sbjct: 504 DETVFSPLKLPTKAQLINAYSYI 526
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 72 PTSSVELRNPSYLRRS 25
PT SV+LRN S LRR+
Sbjct: 534 PTVSVDLRNSSILRRA 549
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 522 SRSVKLCNT-RLEDDELQGLPPRHQGLVRSQVPH 424
S S++ C T R DD + R G +R + PH
Sbjct: 610 SISIQDCETDRANDDTILNNRVRRSGTIREEAPH 643
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 114 LAGSLGFLQ*PLILFDSLKEVLSALGV 194
LAG L F + LFD LKE+ GV
Sbjct: 22 LAGDLVFRPNAIELFDELKEICKDAGV 48
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +3
Query: 291 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 419
+ + C V H + T+ V N +H++ ERNS+
Sbjct: 83 IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = -1
Query: 205 SMSSTPSADKTSLRE 161
SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 120 RQDRQPEETASSPLKLPTSSVELRN 46
++ QP SPLK T SVEL N
Sbjct: 204 KETYQPNTFRRSPLKNDTGSVELSN 228
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 24.6 bits (51), Expect = 9.7
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Frame = -3
Query: 386 YKVGDIVDIRGNGAVQKGMPHKV------YHGKTGRVY---NVTAHALGVIVNKRVRGRI 234
Y VGD VD+ NG V M ++ + TG+V N + L ++ +R G
Sbjct: 658 YDVGDRVDVMINGTVTSAMVKEISIMSTEFRLLTGKVIQAPNSLLNTLWILNMRRSDGIA 717
Query: 233 IPKRINIR----VEHVKHSKCR-QDFLKRVKEN 150
P +N++ ++ ++ + + DFLK K +
Sbjct: 718 DPVTVNLKFGTTLQQIEQLRIKIIDFLKEEKRD 750
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,995
Number of Sequences: 5004
Number of extensions: 43954
Number of successful extensions: 178
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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