Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_L07
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    28   1.7  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    27   2.2  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    26   6.7  
SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    26   6.7  
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    25   8.8  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    25   8.8  

>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = -3

Query: 535 LGTPIKKVVTSEIPCIDXLXKSLVMGSTKNKGEILYPGDVKIKVAEPKGLNALHLEDVIY 356
           L  PI+K ++ +        +++  G T N  EI     ++ ++ EP GL     E V+Y
Sbjct: 130 LRLPIRKQISKD----SSQSQNVDSGKT-NHEEIHESRHLQTEIEEPSGLEESSEESVLY 184

Query: 355 KTLVYDKKEDE 323
               Y+K ++E
Sbjct: 185 SEEFYEKSDEE 195


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +2

Query: 191 LLCNYFEQSLESALYVAINSYIYSYC 268
           +L +Y+   L+SAL+ A++SY+   C
Sbjct: 253 MLYHYYPSFLQSALWTAVSSYLEERC 278


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 592 LTPSEFQQLVRDVRVIEASLGTPIKKVVTSEIPCIDXLXKSLVMGSTKNKGEIL 431
           L P +F   V   R       T + K VTS+    + + + L++  TKN  E+L
Sbjct: 126 LLPPKFTSKVIKNRAKANEEDTEVLKKVTSQKILEETIKRELLLKETKNNNELL 179


>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 568 LVRDVRVIEASL--GTPIKKVVTSEIPCID 485
           LV    +++ +L  GTP+++VV   I CID
Sbjct: 34  LVWGPEIVDKALLSGTPVERVVNDRINCID 63


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 193 IVQLF*TESGISALCRNKLIYL*LLCSNIRNN 288
           + Q+   ESGIS L   KL Y+  LC +  +N
Sbjct: 185 VTQILLLESGISFLENKKLAYIMDLCGDREDN 216


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -3

Query: 631 LDKSMKGTDHVCSLTPSEFQQLVRDVRVIEASLGTPIKKVVTSEIPCI 488
           LDK  K      S+T  + + +V ++  I+AS+    ++++ +EIP +
Sbjct: 39  LDKFKKNLK--VSITSLDQETMVFEISGIDASIANAFRRILIAEIPTL 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,435
Number of Sequences: 5004
Number of extensions: 45797
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)