Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_L05
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 52 7e-08
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 40 3e-04
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 39 5e-04
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 38 9e-04
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 38 0.001
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 38 0.001
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 37 0.002
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 37 0.003
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 36 0.006
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 31 0.10
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 31 0.10
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 31 0.10
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 31 0.18
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 31 0.18
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 30 0.24
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 30 0.31
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 29 0.41
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 29 0.41
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 29 0.72
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 29 0.72
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 28 1.3
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 28 1.3
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 27 1.7
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 27 1.7
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 27 1.7
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 27 2.2
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 27 2.2
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 27 2.9
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 27 2.9
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 25 6.7
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 25 6.7
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 25 6.7
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 25 8.9
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 8.9
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 25 8.9
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 25 8.9
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 52.0 bits (119), Expect = 7e-08
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = -2
Query: 468 KNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLW 289
K+ G ++ RSD K+ + GWDG R++S ++ PL VL H I +A+
Sbjct: 295 KHCGQQNIRIRSDNKILATAGWDGRGRVYSCQTLAPLAVLKYHSDGINSLAFHP------ 348
Query: 288 KAYIMAAGGLDGAITLWDLY 229
+ ++A D I+LW LY
Sbjct: 349 GSNVIALASKDTRISLWKLY 368
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 39.9 bits (89), Expect = 3e-04
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 3/139 (2%)
Frame = -2
Query: 573 LEQQRGIIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKV---KTRSDGKVFTSGGW 403
LE R ++G + I ++++ + + L TI N +V DG F SGG
Sbjct: 283 LETNRLLVGKGNGNIFVYDIIWSESTSKAVLVATITNAHDEQVCGLTWNHDGSQFASGGN 342
Query: 402 DGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNS 223
D + +F +R + + + A++ +++ + SL AG D I ++ +N
Sbjct: 343 DNRVCLFKGSDLRQPLYVWQQNAAVKALSFCPWQRSL---LATGAGSHDKHIRFYNCFNG 399
Query: 222 KQ*NDQIMLYCDLQVMICH 166
K+ ++ LYC Q+ H
Sbjct: 400 KKIDE---LYCGAQITSIH 415
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 39.1 bits (87), Expect = 5e-04
Identities = 24/76 (31%), Positives = 38/76 (50%)
Frame = -2
Query: 459 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAY 280
GI + + DG + +SGG D RI+ S + ++VL EH + I +A+S Y
Sbjct: 309 GIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSP------NGY 362
Query: 279 IMAAGGLDGAITLWDL 232
+A D + +WDL
Sbjct: 363 QLATSSADDTVKIWDL 378
Score = 25.0 bits (52), Expect = 8.9
Identities = 15/69 (21%), Positives = 28/69 (40%)
Frame = -2
Query: 432 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 253
+G + D ++I+ + + H + DV Y V+ + +A G DG
Sbjct: 360 NGYQLATSSADDTVKIWDLRKVSLAHTIPAHSSLVSDVRYIESGVNRF----IATSGYDG 415
Query: 252 AITLWDLYN 226
+ LW+ N
Sbjct: 416 CVKLWNPLN 424
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 38.3 bits (85), Expect = 9e-04
Identities = 23/72 (31%), Positives = 36/72 (50%)
Frame = -2
Query: 432 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 253
+GK SG D IRIF S + L +L H+ I+ V ++ EK+ +GG DG
Sbjct: 398 NGKFIVSGSSDLTIRIFEASSGKLLRMLQGHEDLIRTVRFNDEKI--------VSGGYDG 449
Query: 252 AITLWDLYNSKQ 217
+ +W+ +Q
Sbjct: 450 TVRIWNFNTGEQ 461
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 37.9 bits (84), Expect = 0.001
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = -2
Query: 459 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTE-HKQAIQDVAYSTEKVSLWKA 283
G+ V DGK GG D + I+S F +R LV + HK + DV + +
Sbjct: 366 GLTCVTWSPDGKFIAIGGKDDLVSIYS-FPLRKLVARCQGHKSWVTDVIFDAWRCD-DDN 423
Query: 282 YIMAAGGLDGAITLWD 235
Y +A+ GLD + LWD
Sbjct: 424 YRIASVGLDRKLLLWD 439
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 37.9 bits (84), Expect = 0.001
Identities = 19/75 (25%), Positives = 39/75 (52%)
Frame = -2
Query: 456 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 277
++ ++ SDG+ +G DG I+++ S +V T+H A+ + +S + +
Sbjct: 342 LSTLQYSSDGQRIITGADDGKIKVWDMNSGFCIVTFTQHTSAVSGLCFSK------RGNV 395
Query: 276 MAAGGLDGAITLWDL 232
+ + LDG++ WDL
Sbjct: 396 LFSSSLDGSVRAWDL 410
Score = 34.3 bits (75), Expect = 0.015
Identities = 19/80 (23%), Positives = 34/80 (42%)
Frame = -2
Query: 456 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 277
++ + S G + SG WD +RI+ FS +V + +A+ +
Sbjct: 470 VSSLSFNSSGSLLASGSWDKTVRIWDIFSRSGIVEPLPIPSDVLSLAFHPDGKE------ 523
Query: 276 MAAGGLDGAITLWDLYNSKQ 217
+ LDG +T W++ KQ
Sbjct: 524 VCVASLDGQLTFWNVQEGKQ 543
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/104 (21%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Frame = -2
Query: 402 DGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNS 223
D IRI++W S + +LT H + A+ + ++ + LD + +WD+
Sbjct: 116 DQTIRIWNWQSRNCIAILTGHSHYVMCAAFHPSE------DLIVSASLDQTVRVWDISGL 169
Query: 222 KQ*N-DQIMLYCDLQVMICHSLCQFCLYTSTNALIDYIFRQHXK 94
+ N + + + Q+ H+ L+ ST+A++ ++ H +
Sbjct: 170 RMKNAAPVSMSLEDQLAQAHNSISNDLFGSTDAIVKFVLEGHDR 213
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 36.7 bits (81), Expect = 0.003
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -2
Query: 438 RSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGG- 262
RSDG SGG D ++I+ S P T H A++ VA+ W++ ++A GG
Sbjct: 313 RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP-----WQSNLLATGGG 367
Query: 261 -LDGAITLWD 235
+D I W+
Sbjct: 368 TMDKQIHFWN 377
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 35.5 bits (78), Expect = 0.006
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Frame = -2
Query: 525 IFNLGRKDLSLTLKLDVTIKNPG---INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLV 355
+FN+ L +TL + + K G + V DGK +G D IRI+ R
Sbjct: 312 VFNVETGKL-ITLLQEESSKREGDLYVRSVAFSPDGKYLATGVEDQQIRIWDIAQKRVYR 370
Query: 354 VLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSKQ 217
+LT H+Q I + +S + +L +G D + LWD+ +Q
Sbjct: 371 LLTGHEQEIYSLDFSKDGKTL------VSGSGDRTVCLWDVEAGEQ 410
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 31.5 bits (68), Expect = 0.10
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = -2
Query: 432 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 253
DG+ SG G+ + W + + + L H +Q +A+ ++ S + + +DG
Sbjct: 497 DGRFVFSGDSSGNACFWDWKTCKLMAKLPAHSGPVQSMAFHPQETS----KVATSSIVDG 552
Query: 252 AITLWD 235
+I WD
Sbjct: 553 SIKYWD 558
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 31.5 bits (68), Expect = 0.10
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = -2
Query: 414 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 235
SGG+DG IR++ P V+ H +AI DV + S +++AGG +I +WD
Sbjct: 182 SGGYDGTIRLWDTRIADPEVMSFSHGEAI-DVVLPMQSGST----VISAGG--PSIKVWD 234
Query: 234 LYNSKQ 217
L +Q
Sbjct: 235 LVAGRQ 240
Score = 27.9 bits (59), Expect = 1.3
Identities = 24/107 (22%), Positives = 50/107 (46%)
Frame = -2
Query: 555 IIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSW 376
+ G+A+ ++QIF+L + S+ LD + + ++ F SG D ++++
Sbjct: 97 LAGDATGLVQIFDLSTR--SILRALDAHQFPVHVTQFCPYAN-TTFLSGSDDKTVKVWDL 153
Query: 375 FSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 235
+ L+ H+ ++ ++ + A + +GG DG I LWD
Sbjct: 154 STGAVQYDLSGHEDYVRTASWMS-------ATRLVSGGYDGTIRLWD 193
Score = 25.8 bits (54), Expect = 5.1
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -2
Query: 588 SVDYHLEQQRG--IIGNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFT 415
++D L Q G +I I++++L + T KL K+ I + S+
Sbjct: 209 AIDVVLPMQSGSTVISAGGPSIKVWDLVAGRQTPTKKLSNHQKS--ITCLAMNSENTRLL 266
Query: 414 SGGWDGHIRIFS 379
SGG DGH++I++
Sbjct: 267 SGGLDGHVKIYN 278
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 31.5 bits (68), Expect = 0.10
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -2
Query: 432 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 253
D F S GWD ++++ + H + V S + + A+GG DG
Sbjct: 161 DNLTFVSAGWDKAVKVWDLETFSLRTSHYGHTGYVSAVTISPD------GSLCASGGRDG 214
Query: 252 AITLWDLYNS 223
+ LWDL S
Sbjct: 215 TLMLWDLNES 224
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 30.7 bits (66), Expect = 0.18
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -2
Query: 423 VFTSGGWDGHIRIFSWFSMRPLV-VLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAI 247
V +SGG D HI + VLT H+Q + + +++ + ++A+GG D A+
Sbjct: 345 VLSSGGRDNHILHRDVRAPEHYFRVLTAHRQEVCGLEWNSNE------NLLASGGNDNAL 398
Query: 246 TLWDLYNSK 220
+WD + K
Sbjct: 399 MVWDKFEEK 407
Score = 29.5 bits (63), Expect = 0.41
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -2
Query: 435 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGG-- 262
S+ + SGG D + ++ F +PL H A++ + +S + I+A+GG
Sbjct: 384 SNENLLASGGNDNALMVWDKFEEKPLYSFHNHIAAVKAITWSPHQRG-----ILASGGGT 438
Query: 261 LDGAITLWD 235
D I LW+
Sbjct: 439 ADRTIKLWN 447
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 30.7 bits (66), Expect = 0.18
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = -2
Query: 429 GKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGA 250
G + SG WD +RI++ L +L H + I V+ S + + A DG
Sbjct: 150 GTLLVSGSWDETVRIWNLQDGTCLRMLPAHSEPIISVSISAD------GTLCATASYDGM 203
Query: 249 ITLWDLYNSK 220
+WD+ + +
Sbjct: 204 ARIWDVLSGQ 213
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 30.3 bits (65), Expect = 0.24
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = -2
Query: 438 RSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGG- 262
RS G++ SGG D ++ ++ + S RPL EH A++ + +S + I+A+GG
Sbjct: 259 RSLGQL-ASGGNDNNLFVWDYRSSRPLHKFEEHTAAVKAIGWSPHQRG-----ILASGGG 312
Query: 261 -LDGAITL 241
+D +T+
Sbjct: 313 TIDRCLTI 320
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 29.9 bits (64), Expect = 0.31
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -2
Query: 432 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 253
DG +GG D +R+ W S +T + + V S K +AAG DG
Sbjct: 115 DGTYIATGGMDSQVRL--WKSSTGFEFITAFETVDEIVWLSWHP----KGLFLAAGCNDG 168
Query: 252 AITLWDLYNSK 220
+I +W L + K
Sbjct: 169 SIWMWSLPSGK 179
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 29.5 bits (63), Expect = 0.41
Identities = 17/82 (20%), Positives = 35/82 (42%)
Frame = -2
Query: 456 INKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYI 277
+ V DG S +G I ++ + R + + H+ I +++S E +
Sbjct: 508 VTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGNIYSLSFSREST------V 561
Query: 276 MAAGGLDGAITLWDLYNSKQ*N 211
+ +GG D + WD++ + N
Sbjct: 562 LVSGGSDCTVRAWDVFKTNYNN 583
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 29.5 bits (63), Expect = 0.41
Identities = 23/84 (27%), Positives = 39/84 (46%)
Frame = -2
Query: 483 LDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTE 304
L T+K+ ++ ++G SG +G + I+ + VLT H +AIQ V +S+
Sbjct: 18 LTTTLKHGHATSIRFSTNGYHLASGLVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCWSS- 76
Query: 303 KVSLWKAYIMAAGGLDGAITLWDL 232
+++ A D LWDL
Sbjct: 77 ----CDRFLLTA-SRDWKCILWDL 95
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 28.7 bits (61), Expect = 0.72
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 267 GGLDGAITLWDLYNS 223
GG+DGAI +WDL N+
Sbjct: 195 GGIDGAIKIWDLRNN 209
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 28.7 bits (61), Expect = 0.72
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Frame = -2
Query: 483 LDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRP--LVVLTEH---KQAIQDV 319
L+ T IN + G + TS G D + F W S +P + L +H K D
Sbjct: 482 LNFTTTQKDINHATISNSGILVTSSGTDN--QTFVWDSRKPDKPLSLLKHGKTKMIHFDG 539
Query: 318 AYSTE-----KVSLW--KAYIMAAGGLDGAITLWDL 232
A E ++ W K + GG DG + +WDL
Sbjct: 540 ANEEEVDAGINMAQWQPKGNLFVTGGSDGIVKVWDL 575
Score = 28.3 bits (60), Expect = 0.95
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 459 GINKVKTRSDGKVFTSGGWDGHIRIFSWFSMRPLVV-LTEHKQAIQDVAYSTEKVSL 292
GIN + + G +F +GG DG ++++ P + TE AI +S + L
Sbjct: 548 GINMAQWQPKGNLFVTGGSDGIVKVWDLRLNNPFIQNFTEMNSAITYGGFSEDASKL 604
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -2
Query: 414 SGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWD 235
SG D IRI+ + +PL+VL + I K+ G DG++ LWD
Sbjct: 604 SGSADSTIRIWDLNTGKPLMVLPSNSGYISSFVSDEHKI---------ISGNDGSVKLWD 654
Query: 234 LYNSK 220
+ K
Sbjct: 655 VRTGK 659
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 279 IMAAGGLDGAITLWDLYNSKQ*NDQIML 196
+M +GG + +I +WDL N Q D+ ++
Sbjct: 62 LMVSGGANSSINVWDLQNIDQKEDEDLI 89
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = -2
Query: 435 SDGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLD 256
+DG S G I+++ S V +H + +++S + I+ +GG D
Sbjct: 539 ADGLSLASADESGIIKVWDLRSSNQHVSFVKHSSIVYSLSFSYDNK------ILVSGGAD 592
Query: 255 GAITLWDL 232
+ WDL
Sbjct: 593 TDVNFWDL 600
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 432 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAY 313
DG++ GG GHI F W + + L L ++ ++DV +
Sbjct: 112 DGRMILLGGRKGHISAFDWRTGKLLTEL-HLRETVRDVKW 150
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Frame = -2
Query: 483 LDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFS------WFSMR 364
+ ++++ +N + + DG++F SG D ++ FS WFS R
Sbjct: 175 IQISVQGINVNCIVSSEDGRIFFSGNKDPNLYEFSYQLEEGWFSRR 220
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.1 bits (57), Expect = 2.2
Identities = 23/104 (22%), Positives = 46/104 (44%)
Frame = -2
Query: 543 ASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFSMR 364
A+NV + G+K +L + ++ + + DGK +G D I+++ + +
Sbjct: 335 AANVFDV-QTGKKLFTLHEESPDPSRDLYVRTIAFSPDGKYLVTGTEDRQIKLWDLSTQK 393
Query: 363 PLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDL 232
V + H+Q I + +S +I++ G D LWD+
Sbjct: 394 VRYVFSGHEQDIYSLDFSHN-----GRFIVSGSG-DRTARLWDV 431
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = -2
Query: 432 DGKVFTSGGWDGHIRIFSWFSMRPLVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDG 253
D SG D IRI+ S + L L+ H + + VAY+ Y A+ G D
Sbjct: 439 DDTFVLSGSEDDKIRIWHRESGKLLATLSGHVKCVNYVAYNPV-----DPYQFASAGDDN 493
Query: 252 AITLW 238
+ +W
Sbjct: 494 TVRIW 498
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 2.9
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = -2
Query: 360 LVVLTEHKQAIQDVAYSTEKVSLWKAYIMAAGGLDGAITLWDLYNSKQ 217
L + EH ++ V S K S K+ ++A+GGLD I +WD YN Q
Sbjct: 116 LSTIGEHTDYVKRV--SIPKYS--KSPLVASGGLDKRIIVWD-YNVGQ 158
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 568 TAKRNHRQCFKCDT 527
+ K+ H QCFKCDT
Sbjct: 274 SGKKLHPQCFKCDT 287
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 25.4 bits (53), Expect = 6.7
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -2
Query: 423 VFTSGGWDGHIRIF 382
+F SG WDG+IR++
Sbjct: 425 LFASGSWDGNIRLW 438
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 25.4 bits (53), Expect = 6.7
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +2
Query: 362 GLIENHENIRMCPSQPPLVNTLPSLRVFTLLMPGFLIVTSNLRVKLKSFLPKLNICITFE 541
GL E+HENIR P P R+ L + ++ L + F+ K + +
Sbjct: 68 GLFESHENIRFYPIPSLPAYLQPKNRLQFLFLGPLKVLHQFLALNWALFVRKPASFLFIQ 127
Query: 542 ALPMIPL 562
P IP+
Sbjct: 128 NPPCIPV 134
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 456 INKVKTRSDGKVFTSGGWDGHIRIFS 379
I+ + SDG + +G WD +R++S
Sbjct: 277 ISSLALTSDGTMLATGSWDECVRLWS 302
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 456 INKVKTRSDGKVFTSGGWDGHIRI 385
IN + G + SGG DG++R+
Sbjct: 291 INTIAVHPKGTGYASGGEDGYVRV 314
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 549 GNASNVIQIFNLGRKDLSLTLKLDV 475
GN SNVI N+G +++ + LDV
Sbjct: 1716 GNNSNVINTLNVGISTVNIDIWLDV 1740
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 25.0 bits (52), Expect = 8.9
Identities = 23/90 (25%), Positives = 40/90 (44%)
Frame = -2
Query: 549 GNASNVIQIFNLGRKDLSLTLKLDVTIKNPGINKVKTRSDGKVFTSGGWDGHIRIFSWFS 370
G+ N ++I+N+ + L TL I V+ +++S +D IRI+
Sbjct: 245 GSKDNTVRIWNVKLRTLLFTLSGHTA----PITCVRWGGQNWIYSSS-YDKTIRIWDAKD 299
Query: 369 MRPLVVLTEHKQAIQDVAYSTEKVSLWKAY 280
+ L +L H + ++ STE V AY
Sbjct: 300 GKCLHILKGHAARVNHLSLSTEHVLRSGAY 329
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 13 SXLHRSATFHQHNLMPLHXFVHNLRSXFXML 105
S H A H M L F+H LRS F ++
Sbjct: 184 SCCHSGAPVHSGPSMALRIFLHFLRSCFYLV 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,431,327
Number of Sequences: 5004
Number of extensions: 47335
Number of successful extensions: 187
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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