Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_L04
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0737 + 21087442-21088282,21088402-21088524,21088623-210887...    31   1.3  

>07_03_0737 +
           21087442-21088282,21088402-21088524,21088623-21088744,
           21088784-21089027,21089430-21089670,21089746-21089899,
           21090179-21090214,21090215-21090520
          Length = 688

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 20  ILGTYNNWSSIIGXHGTASRRVPRIHYNALLMNLIKKKKNVS 145
           I+GTY   +     HG  S ++    +  L++ ++ K+KN S
Sbjct: 520 IVGTYGYMAPEYAIHGNVSPKIDIFSFGVLVLEIVTKRKNCS 561


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,199,103
Number of Sequences: 37544
Number of extensions: 246240
Number of successful extensions: 386
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)