Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_L03
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    26   5.8  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    25   7.6  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   7.6  

>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 370 SSEPLSSFDFNILTLFRLEHGDYKHSNQ-RSLFHHGDSDVYYARVIK 233
           + E  S FD ++ T   + HGD   SN+ R  F+ G+ ++   R+++
Sbjct: 153 NGEGSSMFDADMTTSNAVAHGDESISNEFRESFYFGNDNLSKDRLLR 199


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 126 GYLFWIYVLNVRLTGLIAF 70
           GYLFW+++L+  L+    F
Sbjct: 285 GYLFWLWILSALLSSAYTF 303


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 241 HGRSRHQNRHDGREIFDCCVCS 306
           H + RH+  H G + F C  C+
Sbjct: 613 HDKRRHEQLHTGIKAFACVTCN 634


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,305
Number of Sequences: 5004
Number of extensions: 46419
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)