Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_L03
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   1.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.2  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +3

Query: 576 YQNDYVNFTVQCRGEKHLNFIINYIEEDL 662
           Y ND   F V C  E HL  I   +  DL
Sbjct: 210 YHNDDKTFLVWCNEEDHLRIISMQMGGDL 238


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 475 LFFKT*IIISAVGTTTFDLCYVDCHR 398
           +F+   +IISA+G TT  L  + C +
Sbjct: 42  VFYSVLMIISAIGNTTV-LILITCRK 66


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 250 SRHQNRHDGREIFDCCVCS 306
           +RH   H G + + C  CS
Sbjct: 108 TRHYRTHTGEKPYQCEYCS 126



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 253 RHQNRHDGREIFDCCVCS 306
           RH   H G     C VCS
Sbjct: 165 RHMRIHTGERPHKCTVCS 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,298
Number of Sequences: 438
Number of extensions: 3018
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)