Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_L02
         (646 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q17003 Cluster: Putative reverse transcriptase; n=29; C...    51   2e-05
UniRef50_UPI0000E4916E Cluster: PREDICTED: similar to reverse tr...    47   4e-04
UniRef50_UPI0001560E0F Cluster: PREDICTED: hypothetical protein;...    34   2.6  
UniRef50_Q4F8P9 Cluster: Reverse transcriptase; n=2; Aedes aegyp...    34   3.4  
UniRef50_UPI0000586152 Cluster: PREDICTED: similar to ORF2-encod...    33   4.5  
UniRef50_Q54Y90 Cluster: Protein kinase, TKL group; n=1; Dictyos...    33   7.8  
UniRef50_Q27083 Cluster: Clotting factor G beta subunit precurso...    33   7.8  
UniRef50_Q1E5M1 Cluster: Predicted protein; n=1; Coccidioides im...    33   7.8  

>UniRef50_Q17003 Cluster: Putative reverse transcriptase; n=29;
            Culicidae|Rep: Putative reverse transcriptase - Anopheles
            gambiae (African malaria mosquito)
          Length = 1049

 Score = 51.2 bits (117), Expect = 2e-05
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
 Frame = -1

Query: 640  INRLETIQTXFMRF----LQFKTKVYDPDYETRCRRHHILPLEERRRIADIVLYSKIAQS 473
            I R+E IQ    R+    L ++ +   P Y  RCR   + PL  RRR A     + +   
Sbjct: 915  IARIEAIQRKLTRYALRLLPWQDRNNLPPYAARCRLLGLEPLSVRRRNAQCSFIAGLLNG 974

Query: 472  GVDSSYLLSLLCLRVPPRPIMRESRQSSRLGVPRGGTNYRRNAFFIRAASSFNALADFPE 293
             +DSS LL  + +  P R +   SR++ RL  PR     R +  F R ++ FN ++D  +
Sbjct: 975  SIDSSPLLHRVDIYAPSRTL--RSRETLRLAQPRSSAG-RSDPMF-RMSAVFNTVSDCFD 1030

Query: 292  LDIFNTSTKSIRRTL 248
             DI     K   R L
Sbjct: 1031 FDISTQCFKERLRLL 1045


>UniRef50_UPI0000E4916E Cluster: PREDICTED: similar to reverse
            transcriptase-like protein; n=5; Strongylocentrotus
            purpuratus|Rep: PREDICTED: similar to reverse
            transcriptase-like protein - Strongylocentrotus
            purpuratus
          Length = 1043

 Score = 46.8 bits (106), Expect = 4e-04
 Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 4/130 (3%)
 Frame = -1

Query: 640  INRLETIQTXFMRFLQFKTKVYDPDYETRCRRHHILPLEERRRIADIVLYSKIAQSGVDS 461
            INRL+  Q    + L F+ K +D       R+ H LP+E+R     + +  K     +  
Sbjct: 912  INRLQRAQNRAAK-LVFRAKKHD-HASPFLRQLHWLPIEKRITYKILTMTYKCIHK-MAP 968

Query: 460  SYLLSLLCLRVPPRPIMRESRQSSRLGVPRGGTNYRRNAFFIRAASSFN----ALADFPE 293
            SYL +LL L  P R  +R     + L VPR  T +   +F + A   +N    A+   P 
Sbjct: 969  SYLQNLLSLHQPGRHGLRSGNDPTLLSVPRSRTRFGDRSFSVSAPRLWNNLPQAVRSSPS 1028

Query: 292  LDIFNTSTKS 263
            L IF  S K+
Sbjct: 1029 LAIFQRSLKT 1038


>UniRef50_UPI0001560E0F Cluster: PREDICTED: hypothetical protein;
           n=1; Equus caballus|Rep: PREDICTED: hypothetical protein
           - Equus caballus
          Length = 255

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = -1

Query: 520 RRRIADIVLYSKIAQSGVDSSYLLSLLCLRVPPRPIMRESRQSSRLGVPRGGTN 359
           +RRI D++ + K  +S +    L+S LC +VPP P  R  R  S+   P G T+
Sbjct: 98  QRRIRDVLEWVKKGRSTILREDLISFLCGKVPPVPPPRSPRTPSK--PPAGATS 149


>UniRef50_Q4F8P9 Cluster: Reverse transcriptase; n=2; Aedes
           aegypti|Rep: Reverse transcriptase - Aedes aegypti
           (Yellowfever mosquito)
          Length = 820

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = -1

Query: 643 YINRLETIQTXFMRF----LQFKTKVYDPDYETRCRRHHILPLEERRRIADIVLYSKIAQ 476
           +I R+E++Q  F+R     L ++     P YE RCR   I  LE RR ++     +K+ Q
Sbjct: 704 WITRIESVQRKFLRHALRNLPWRDPSNLPPYEDRCRLLGIDTLENRRCVSQAAFVAKLLQ 763


>UniRef50_UPI0000586152 Cluster: PREDICTED: similar to ORF2-encoded
            protein; n=1; Strongylocentrotus purpuratus|Rep:
            PREDICTED: similar to ORF2-encoded protein -
            Strongylocentrotus purpuratus
          Length = 883

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 31/111 (27%), Positives = 47/111 (42%)
 Frame = -1

Query: 640  INRLETIQTXFMRFLQFKTKVYDPDYETRCRRHHILPLEERRRIADIVLYSKIAQSGVDS 461
            + RL+  Q    + L F+ K YD       ++ H LP+E+R     + +  K   +   +
Sbjct: 752  VKRLQRAQNRAAK-LVFRAKKYD-HVTPFLQQLHWLPVEKRITYKILTITYKCLNNSAPN 809

Query: 460  SYLLSLLCLRVPPRPIMRESRQSSRLGVPRGGTNYRRNAFFIRAASSFNAL 308
             YL  LL      RP +R S   + L VPR  T     +F   A   +N L
Sbjct: 810  -YLTKLLRKHQTARPGLRSSNDPALLAVPRTNTCTGDKSFSSAAPRLWNNL 859


>UniRef50_Q54Y90 Cluster: Protein kinase, TKL group; n=1;
            Dictyostelium discoideum AX4|Rep: Protein kinase, TKL
            group - Dictyostelium discoideum AX4
          Length = 1090

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -1

Query: 424  PRPIMRESRQSSRLGVPRGGTNYRRNAFFIRAASSFNALADFPEL-----DIFNTSTKSI 260
            P+PI   +  SS   +P GG  +      IRAASSF    +   L     D+F++S  + 
Sbjct: 855  PKPISSSTSSSSTPQLPIGGNQHSHRPLPIRAASSFEIKNNHLNLSSSPGDLFSSSPSTF 914

Query: 259  RRTLVSR 239
              T++ R
Sbjct: 915  EITMMER 921


>UniRef50_Q27083 Cluster: Clotting factor G beta subunit precursor;
           n=1; Tachypleus tridentatus|Rep: Clotting factor G beta
           subunit precursor - Tachypleus tridentatus (Japanese
           horseshoe crab)
          Length = 309

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 536 YVMPSTSRL-VVGIIHFSFKLKKPHEXGLYGLQSIYIN 646
           Y  P+T R+ +VG++ F F+  +P+  G+Y   S Y+N
Sbjct: 248 YQNPTTGRVKIVGVVSFGFECARPNFPGVYTRLSSYVN 285


>UniRef50_Q1E5M1 Cluster: Predicted protein; n=1; Coccidioides
           immitis|Rep: Predicted protein - Coccidioides immitis
          Length = 412

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +2

Query: 455 IRRVHPRLSYFAIKNNISYPTSFLQWKYVMPSTSRLVVGIIHFSFKLKKPHEXGLYGLQS 634
           + R   R S+F++   + +     +WK ++ + +  V  +I F+  + + H  GL+GLQ 
Sbjct: 191 LNREDRRASFFSLLKTL-WSQRIEKWKSLLENGTEFVENMISFTPTIHRYHSAGLFGLQP 249

Query: 635 I 637
           I
Sbjct: 250 I 250


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 516,115,998
Number of Sequences: 1657284
Number of extensions: 8706253
Number of successful extensions: 20028
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20028
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)