Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_L02
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    27   2.3  
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   3.1  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   3.1  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   5.3  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    25   7.1  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   9.3  

>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 397 DGSRALWVSGAPL-NITTIEDKTSPPQTELFCYKEQ 501
           DG+R   V GAPL  + T+E+    P+  L  YK++
Sbjct: 464 DGTRITCVKGAPLWVLKTVEEDHPIPEDVLSAYKDK 499


>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 445 TIEDKTSPPQTELFCYKEQYQLSYVFPPVEVCD 543
           ++E+ T  PQ  LFC   +   +++FPP+ + D
Sbjct: 38  SLENDTQLPQI-LFCINPKSIRNFLFPPIAISD 69


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +2

Query: 554 SRLVVGIIHFSFKL 595
           SRLVVGI+HF F L
Sbjct: 446 SRLVVGIVHFFFSL 459


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +2

Query: 452 KIRRVHPRLSYFAIKNNISYPTSFLQWKYV 541
           ++ +V P+L++   KN+I  P +F + K++
Sbjct: 237 ELEKVEPQLTFLRSKNSIEKPRNFRREKFL 266


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -1

Query: 556 RCRRHHILPLEERRRIADIVLYSKIAQSGVDS 461
           R RRH++L  +ER   +DI + + I +SG+DS
Sbjct: 246 RERRHYLLKNDERNPKSDIKISNGI-KSGLDS 276


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 505 QLSYVFPPVEVCDAFYISSRSRDHTL 582
           Q++ +   VE C  FYISSR  +  +
Sbjct: 328 QVTEILEKVEQCKQFYISSREMEENV 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,026
Number of Sequences: 5004
Number of extensions: 38156
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)