Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_L02
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0661 + 23225514-23227073 32 0.45
05_07_0206 - 28405109-28406671 30 1.8
12_01_0403 - 3185897-3186931,3187200-3187311,3187425-3187735,318... 29 2.4
03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389 29 4.2
06_01_0614 + 4448129-4448157,4448733-4449231,4449512-4449550,444... 28 7.3
02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273... 27 9.7
01_05_0333 + 21064693-21066006 27 9.7
01_02_0050 + 10649275-10649655,10649807-10649921,10651003-106510... 27 9.7
>06_03_0661 + 23225514-23227073
Length = 519
Score = 31.9 bits (69), Expect = 0.45
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = -1
Query: 577 YDPDYETRCRRHHIL---PLEERRRIADIVLYSKIAQ-SGVDSSYLLSLLCLRVPPRPIM 410
Y PD + +C R + L A++ KI + SG+ L LRVPP P M
Sbjct: 115 YKPDPQRKCTRETFMRCSSLTGSFTDANLDFQRKILERSGLGEDTYLPPAVLRVPPNPCM 174
Query: 409 RESRQSSR 386
E+R+ +R
Sbjct: 175 DEARKEAR 182
>05_07_0206 - 28405109-28406671
Length = 520
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = -1
Query: 577 YDPDYETRCRRHHILPLEERRRI---ADIVLYSKIAQ-SGVDSSYLLSLLCLRVPPRPIM 410
Y PD E +C R + ER ++ KI + SG+ L L +PP P M
Sbjct: 116 YKPDDERKCSRARFMNCTERLGTFTPENVEFQRKIIERSGLGEDTYLPEAVLNIPPNPSM 175
Query: 409 RESRQSSRL 383
+R+ + +
Sbjct: 176 ANARKEAEM 184
>12_01_0403 -
3185897-3186931,3187200-3187311,3187425-3187735,
3188112-3188324,3188834-3189052
Length = 629
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -1
Query: 640 INRLET-IQTXFMRFLQFKTKVYDPDYETRCRRHHILPLEERRRIADIVLYSKIAQSGVD 464
I ++T +Q+ +R +++ K D + RH LPLE + R+ Y +A GVD
Sbjct: 281 IGNMQTYLQSMTVRLEEWRVKRRDIE---EWMRHRQLPLELQERVRRFFQYKWLATRGVD 337
Query: 463 SSYLLSLLCL 434
+L L L
Sbjct: 338 EESILQSLPL 347
>03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389
Length = 711
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = -1
Query: 640 INRLET-IQTXFMRFLQFKTKVYDPDYETRCRRHHILPLEERRRIADIVLYSKIAQSGVD 464
I ++T +Q+ +R + + K D + + H +LP E R R+ Y + GVD
Sbjct: 403 IGNIQTYLQSMTVRLEEMRVKRRDSE---QWMHHRLLPQELRERVRRYDAYKWVNTRGVD 459
Query: 463 SSYLLSLLCLRVPPRPIMRESRQSSRLGVPR 371
L++ L P+ + R+ ++ LG+ R
Sbjct: 460 EEVLVANL-----PKDLRRDIKRHLCLGLVR 485
>06_01_0614 +
4448129-4448157,4448733-4449231,4449512-4449550,
4449590-4449802,4449941-4450227,4450456-4450567,
4451515-4451751,4451857-4451957,4452285-4452384,
4452509-4453141
Length = 749
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 547 RHHILPLEERRRIADIVLYSKIAQSGVDSSYLLSLL 440
RH LP + R R+ V Y +A GVD +L L
Sbjct: 418 RHRQLPQKLRERVRRFVHYKWLATRGVDEESILKAL 453
>02_01_0377 +
2728892-2729187,2729483-2729544,2730516-2730570,
2730784-2730858,2730980-2731054,2731155-2731202,
2731548-2732357,2732450-2732498,2733157-2733266,
2733381-2733488,2733920-2733980
Length = 582
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 574 DPDYETRCRRHHILPLEERRRIA 506
D DY + RRHH PLEE ++
Sbjct: 227 DEDYHNKRRRHHRGPLEETELVS 249
>01_05_0333 + 21064693-21066006
Length = 437
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 496 EQYQLSYVFPPVEVCDAFYISSRSRDHTL*F*IEETS*IXSVWS 627
++++LS + PP E+ D F + D L E + SVWS
Sbjct: 229 KRHRLSLIDPPAELDDGFVLMPLDNDGVLGLAAVEDHSLLSVWS 272
>01_02_0050 +
10649275-10649655,10649807-10649921,10651003-10651009,
10651035-10651216,10651318-10651530,10651621-10651688,
10651772-10651846,10651961-10652068,10652413-10652530,
10652652-10652793,10653084-10653140,10653281-10653701,
10654064-10654528
Length = 783
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 234 NHRLTNVLLILLVEVLKMSSSGKS 305
NH L+N LL+LL ++ + SSG S
Sbjct: 210 NHSLSNTLLLLLKQLSGLDSSGPS 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,779,094
Number of Sequences: 37544
Number of extensions: 238616
Number of successful extensions: 543
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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