Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_L02
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC024741-1|AAK68394.3|  789|Caenorhabditis elegans Hypothetical ...    28   6.5  

>AF039048-9|AAB94233.1|  362|Caenorhabditis elegans Hypothetical
           protein F16B4.2a protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/70 (21%), Positives = 34/70 (48%)
 Frame = -1

Query: 646 IYINRLETIQTXFMRFLQFKTKVYDPDYETRCRRHHILPLEERRRIADIVLYSKIAQSGV 467
           ++  RLE +   F+     +  V   D++TRCR      L++++ +  +++     +   
Sbjct: 18  VFEERLEPLDWSFLPVEIRREVVKHTDFQTRCRLRQ-CSLQDQQIVDSLLIELPFVRIET 76

Query: 466 DSSYLLSLLC 437
           D +Y+  L+C
Sbjct: 77  DKNYVSVLIC 86


>AF039048-8|AAT68896.1|  367|Caenorhabditis elegans Hypothetical
           protein F16B4.2b protein.
          Length = 367

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/70 (21%), Positives = 34/70 (48%)
 Frame = -1

Query: 646 IYINRLETIQTXFMRFLQFKTKVYDPDYETRCRRHHILPLEERRRIADIVLYSKIAQSGV 467
           ++  RLE +   F+     +  V   D++TRCR      L++++ +  +++     +   
Sbjct: 18  VFEERLEPLDWSFLPVEIRREVVKHTDFQTRCRLRQ-CSLQDQQIVDSLLIELPFVRIET 76

Query: 466 DSSYLLSLLC 437
           D +Y+  L+C
Sbjct: 77  DKNYVSVLIC 86


>AC024741-1|AAK68394.3|  789|Caenorhabditis elegans Hypothetical
           protein R05G9R.1 protein.
          Length = 789

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 503 ISYPTSFLQWKYVMPSTSRLVVGIIHFSFKLKKP 604
           I+YPT++L    V P +SRL    I  +  L++P
Sbjct: 399 ITYPTTYLSTSSVRPPSSRLTFSPIRRTTTLEEP 432


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,023,670
Number of Sequences: 27780
Number of extensions: 214175
Number of successful extensions: 480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)