Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_L01
(322 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subu... 43 1e-05
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 28 0.30
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 2.8
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 25 2.8
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 25 3.8
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 25 3.8
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 25 3.8
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 3.8
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 24 5.0
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 24 6.6
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 24 6.6
>SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subunit
7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 92
Score = 43.2 bits (97), Expect = 1e-05
Identities = 21/51 (41%), Positives = 27/51 (52%)
Frame = -2
Query: 198 KIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIY 46
K +G++TY +S +QR AG N+FRR VA PF I Y IY
Sbjct: 21 KQKGIITYSLSPFQQRPMAGFFKTSTQNMFRRVMTEGLYVAIPFGIAYYIY 71
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 28.3 bits (60), Expect = 0.30
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -2
Query: 147 YAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEGVER 31
Y + G +++ ++ KVAP I YL+YE ++
Sbjct: 383 YKTTKNEGFRGLYKGLSPNLLKVAPSVAISYLVYENCKK 421
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.0 bits (52), Expect = 2.8
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -2
Query: 162 HEQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEGVERE 28
H R Y SNG+ I F+ +FK A I L + + RE
Sbjct: 345 HSTRTYVEQFSNGVTIISYNFKPELFKNAAVTSINEL-FSQITRE 388
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 2.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 3 VLPCLVCXAPFQLLHISSI 59
V PCL+C A + LHI ++
Sbjct: 271 VEPCLMCAAALKQLHIKAV 289
>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 24.6 bits (51), Expect = 3.8
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -2
Query: 132 SNGIPNIFRRFRESVFKVAPPFIIGYLIYEGVEREXHRRDTEE 4
S G+ +FR F +F + + ++ YEG+ R ++ + E
Sbjct: 294 SEGLLGLFRGFGPRIFWTSSQSSLMFVFYEGIIRLFNKNNVLE 336
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 24.6 bits (51), Expect = 3.8
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = -2
Query: 219 KHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEG 40
+ G++ L TYK+ GA+ G+P+ + + V +G LIY+
Sbjct: 20 REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79
Query: 39 V 37
V
Sbjct: 80 V 80
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 24.6 bits (51), Expect = 3.8
Identities = 15/61 (24%), Positives = 26/61 (42%)
Frame = -2
Query: 219 KHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEG 40
+ G++ L TYK+ GA+ G+P+ + + V +G LIY+
Sbjct: 20 REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79
Query: 39 V 37
V
Sbjct: 80 V 80
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 24.6 bits (51), Expect = 3.8
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 213 FGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIF 109
FG++ ++R + +K +AH A IS G+ N F
Sbjct: 41 FGKVVQLRSFIPFKNAAHALE-NANDISEGVLNDF 74
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 24.2 bits (50), Expect = 5.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -2
Query: 231 TTMGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRR 103
T GKHF ELA G ++ +Q+ + +G + +R
Sbjct: 288 TVFGKHFQELANDYGDNLVVVNLLDQKGREAPLRSGFEKLCKR 330
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 23.8 bits (49), Expect = 6.6
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = +2
Query: 98 RNLLKILGIPFEIAP--AYARCS 160
+ LL++ G+P+ +AP A A+CS
Sbjct: 761 QELLRLFGLPYIVAPQEAEAQCS 783
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 23.8 bits (49), Expect = 6.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 28 LPFNSFIYQVSNDEGR 75
L FNS+I V+ DEGR
Sbjct: 304 LNFNSYIKPVAGDEGR 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,663
Number of Sequences: 5004
Number of extensions: 26087
Number of successful extensions: 66
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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