Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_L01
(322 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1041 - 10711362-10711428,10711571-10712262,10712622-107127... 30 0.47
05_07_0042 - 27265687-27267159 29 0.81
01_06_0624 - 30683249-30684631 28 1.9
06_01_0779 - 5823389-5823787 27 3.3
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103... 27 4.3
02_05_0959 + 33086498-33086544,33087295-33087967,33088665-330890... 26 5.7
01_05_0225 - 19501643-19501903,19503974-19504477 26 5.7
11_01_0431 + 3308001-3308124,3308209-3308366,3311285-3311794 26 7.6
09_04_0528 - 18348071-18348136,18348477-18351209 26 7.6
02_01_0148 - 1051121-1051192,1051378-1051512,1052343-1052396,105... 26 7.6
>12_01_1041 -
10711362-10711428,10711571-10712262,10712622-10712777,
10712885-10713957,10714422-10714524,10714694-10714876,
10715007-10715099,10715379-10715564,10716530-10716793
Length = 938
Score = 29.9 bits (64), Expect = 0.47
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 76 GYFKNALTKSSEDIRNTI*NSSSICSLFMGRYLVGDKTPNFS 201
G+F N L + R+ + N+ SI SL Y +G P+F+
Sbjct: 310 GFFANTLKRHGRGERSDVGNNDSIESLLDPEYALGKDAPDFT 351
>05_07_0042 - 27265687-27267159
Length = 490
Score = 29.1 bits (62), Expect = 0.81
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 104 LLKILGIPFEIAPAYARCSWADIL 175
++ ++ +PF + P YA+C W D L
Sbjct: 178 VMAMVELPFMVRPEYAQCLWGDTL 201
>01_06_0624 - 30683249-30684631
Length = 460
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 26 CSLSTPSYIKYPMMKGGATLKTLSRNLLKILGI 124
C+ + SY+ P+M+ + + R+LL+I G+
Sbjct: 121 CASALASYLHIPVMRSAVSFGQMGRSLLRIPGV 153
>06_01_0779 - 5823389-5823787
Length = 132
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 113 ILGIPFEIAPAYARCSWADIL*VTRPRILASSP 211
+LGIP +RC W VT PR++ S+P
Sbjct: 67 VLGIP--ATTTASRCCWTSWWIVTAPRMMLSAP 97
>12_02_0979 -
25009721-25009975,25010058-25010127,25010216-25010381,
25010501-25010651,25010843-25010890,25011172-25011225,
25011400-25011513,25012666-25012782,25012899-25012991,
25013085-25013123,25013990-25014055
Length = 390
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 180 TYKISAHEQRAYAGAISNGIPNIFRRFRESVFKV 79
TYK+SAH + Y + I RRF+ F+V
Sbjct: 323 TYKLSAHLRHNYLTVFTIAALEILRRFQWVFFRV 356
>02_05_0959 +
33086498-33086544,33087295-33087967,33088665-33089058,
33089140-33089210,33089373-33089497,33089705-33089821,
33094128-33094238,33094321-33094413,33094726-33094984,
33095067-33095189
Length = 670
Score = 26.2 bits (55), Expect = 5.7
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = +1
Query: 7 FRVSSVXLPFNS-FIYQVSNDEGRGYFKNALTKSSEDIRNTI*NSSSICSLFMGRYLVGD 183
F S+ PF S + VS + RG SE ++ NS F R L D
Sbjct: 51 FVPSTFRSPFGSRTVADVSKPDFRGLSGKTNLGRSESSKSN--NSDDETHQFWHRQLPDD 108
Query: 184 KTPNFS*FSKVFAHSGEL 237
P+FS KV GEL
Sbjct: 109 IIPDFSDMEKVEQQHGEL 126
>01_05_0225 - 19501643-19501903,19503974-19504477
Length = 254
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 16 SSVXLPFNSFIYQVSNDEGRGYFKNALTKSSEDIRNTI 129
+S LP+ + VSN+E + + KSS+D R +I
Sbjct: 157 ASPLLPWRDSLVMVSNEEYKSVEHRVVIKSSQDARVSI 194
>11_01_0431 + 3308001-3308124,3308209-3308366,3311285-3311794
Length = 263
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 121 NTI*NSSSICSLFMGRYLVG-DKTPNFS*FSKVFAHSGELLT 243
N + N + +L L+G D N F+K AH GE+LT
Sbjct: 74 NPVQNEKELFNLRHSSRLIGQDHKANADYFNKPLAHYGEMLT 115
>09_04_0528 - 18348071-18348136,18348477-18351209
Length = 932
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +1
Query: 34 FNSFIYQVSNDEGRGYFKNALTKSSEDIRNTI*NSSSICSLFMGRYLVGDK 186
+N I +V N+E + L S + + N + N C++F Y++ K
Sbjct: 409 YNQLISEVHNNENLNRVEKILNLSYKHLPNYLKNCFLYCAMFPEDYIIQRK 459
>02_01_0148 -
1051121-1051192,1051378-1051512,1052343-1052396,
1052501-1052581,1052667-1052826,1053346-1053453,
1053543-1053718,1053952-1054002,1054154-1054264,
1054493-1054547,1055667-1055789,1055922-1056007,
1056235-1056349,1056429-1056667
Length = 521
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +2
Query: 68 KGGATLKTLSRNLLKILGI----PFEIAPAYARCSWA 166
K G L+ S L ++ G+ P EI+PAY WA
Sbjct: 36 KSGRRLEVYSEVLARLRGLGAAAPVEISPAYEDALWA 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,466,845
Number of Sequences: 37544
Number of extensions: 153696
Number of successful extensions: 319
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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