Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_L01
(322 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81538-2|CAB04384.1| 90|Caenorhabditis elegans Hypothetical pr... 42 1e-04
U39652-3|AAA80402.1| 90|Caenorhabditis elegans Hypothetical pr... 42 1e-04
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 29 0.99
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical... 29 0.99
U64600-4|AAK39201.1| 299|Caenorhabditis elegans C.elegans homeo... 27 2.3
AY519853-1|AAR89634.1| 545|Caenorhabditis elegans acetylcholine... 27 3.0
AF067943-10|AAC17666.3| 545|Caenorhabditis elegans Acetylcholin... 27 3.0
AF016435-3|AAB65879.1| 438|Caenorhabditis elegans Hypothetical ... 27 3.0
AC024801-4|AAF59648.4| 485|Caenorhabditis elegans Hypothetical ... 25 9.2
>Z81538-2|CAB04384.1| 90|Caenorhabditis elegans Hypothetical
protein F45H10.2 protein.
Length = 90
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = -2
Query: 228 TMGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRF-RESVFKVAPPFIIGYL 52
+MGKHFG L K+ G + ++ +EQ+AY G F+ + + + P I YL
Sbjct: 7 SMGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVKTFKTYVWDQWYYYIPQTIGAYL 66
Query: 51 IYEGVEREXHRRDTEEP 1
+Y+ ++ + + P
Sbjct: 67 LYDWAKKTNVAANRKNP 83
>U39652-3|AAA80402.1| 90|Caenorhabditis elegans Hypothetical
protein R07E4.3 protein.
Length = 90
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = -2
Query: 225 MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRF-RESVFKVAPPFIIGYLI 49
MGKHFG L K+ G + ++ +EQ+AY G F+ + + + P I YL+
Sbjct: 8 MGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVRTFKTYVWDQWYYYIPQTIGAYLL 67
Query: 48 YEGVEREXHRRDTEEP 1
Y+ ++ + + P
Sbjct: 68 YDWAKKTNVAANRKNP 83
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 28.7 bits (61), Expect = 0.99
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 47 YIKYPMMKGGATLKTLSRNLLKIL-GIPFEI 136
YI Y +KG +K L++NL K+L G+P I
Sbjct: 773 YIHYKEVKGARGVKVLAKNLEKVLAGLPIYI 803
>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
protein Y54F10BM.2 protein.
Length = 1173
Score = 28.7 bits (61), Expect = 0.99
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 47 YIKYPMMKGGATLKTLSRNLLKIL-GIPFEI 136
YI Y +KG +K L++NL K+L G+P I
Sbjct: 893 YIHYKEVKGARGVKVLAKNLEKVLAGLPIYI 923
>U64600-4|AAK39201.1| 299|Caenorhabditis elegans C.elegans homeobox
protein 30 protein.
Length = 299
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = -3
Query: 257 LQNLEVRSSPLWANTLEN*LKFGVLSPTRYLPMN 156
+QNL +RSSP WAN + L G P LPM+
Sbjct: 232 VQNL-IRSSPYWANYITA-LPMGTQLPMMGLPMS 263
>AY519853-1|AAR89634.1| 545|Caenorhabditis elegans acetylcholine
receptor (62.5 kD)(acr-23) protein.
Length = 545
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 300 DFSLHSSLNIT*DFIAKFRS*KFTTMGKHFGELAKIRGLVTYKIS 166
D +L++SL + K K TT+GK+ G + ++ YKIS
Sbjct: 112 DTTLYNSLEMDDSASKKLTHVKLTTLGKNQGAMVELLYPTIYKIS 156
>AF067943-10|AAC17666.3| 545|Caenorhabditis elegans Acetylcholine
receptor protein 23 protein.
Length = 545
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 300 DFSLHSSLNIT*DFIAKFRS*KFTTMGKHFGELAKIRGLVTYKIS 166
D +L++SL + K K TT+GK+ G + ++ YKIS
Sbjct: 112 DTTLYNSLEMDDSASKKLTHVKLTTLGKNQGAMVELLYPTIYKIS 156
>AF016435-3|AAB65879.1| 438|Caenorhabditis elegans Hypothetical
protein F59D6.4 protein.
Length = 438
Score = 27.1 bits (57), Expect = 3.0
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +1
Query: 43 FIYQVSNDEGRGYFKNALTKSSEDIRNTI*NSSSICSLFMGRYLVGDKTPNFS*FSKVFA 222
++ + S E G +N K E I + N + CS+ G + +KTP+ S S +
Sbjct: 84 YLSEYSKIEVSGNLENCGCKGGE-IEISTKNQFANCSVLYGGLQIFNKTPDLSALSNIEI 142
Query: 223 HSG--ELLTSKFCN-KILRNIQ 279
G E+ S F N L+N++
Sbjct: 143 IKGEIEIQNSNFQNLTFLKNLK 164
>AC024801-4|AAF59648.4| 485|Caenorhabditis elegans Hypothetical
protein Y50D7A.3a protein.
Length = 485
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 71 GGATLKTLSRNLLKILGIPFEIAPAYARCSWAD 169
G AT + L + G P +AP RC W D
Sbjct: 180 GFATRIPRGKKLRDLCGTPGYLAPETIRCQWYD 212
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,390,008
Number of Sequences: 27780
Number of extensions: 140643
Number of successful extensions: 316
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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