Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_K24
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   2.4  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   2.4  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    27   3.2  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    26   4.2  
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    26   5.5  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    25   7.3  
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c...    25   7.3  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 301 FEGHPFRKDFPLSGYV-EVRYDDEQKRVVVEPLELAQEFRRFELSAPWEQFPNFRANPVT 125
           FE  PF KD PL GY+  +   + Q  +++ P+  +       L + W  +   R  PV+
Sbjct: 477 FERWPFLKDLPLKGYLFPLCEPNLQSAMLLVPITYSDALLDDYLCSCWNLWKKLRL-PVS 535

Query: 124 A 122
           A
Sbjct: 536 A 536


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 20/67 (29%), Positives = 26/67 (38%)
 Frame = +3

Query: 327 KSGWLAKNTPYMSQISRSYQFAALNTSQAESTGVNSSV*VLTLIRAL*RTESMLYMISNL 506
           K GWL  N PY+  I     F   N     S G+       T         S LY +++ 
Sbjct: 470 KMGWLKPNQPYLLSIQDPVDFQ--NDVSKSSRGLLRV--KATFANGFDLLTSKLYALASR 525

Query: 507 FEREGTS 527
            EREG +
Sbjct: 526 IEREGVN 532


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 268 LSGYVEVRYDDEQKRVVVEPLELAQEFRRFELSA 167
           +S    + +DDE+KRV VE  ++  +F+   LSA
Sbjct: 14  ISDLRSLEHDDEEKRVNVELAKIRAKFQSSTLSA 47


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 42  FTFQINCTISYALLFFLVDPQMGSLLPAVTGLALKLGNCSHGALS 176
           FTF++ CT  Y +  +    Q  + LP +  +  K   C HG LS
Sbjct: 189 FTFKLECTHKYNIKVYEACLQSFNALP-LAAIMNKQFLCVHGGLS 232


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/75 (22%), Positives = 27/75 (36%)
 Frame = -2

Query: 346 FANHPDLRRILTDYGFEGHPFRKDFPLSGYVEVRYDDEQKRVVVEPLELAQEFRRFELSA 167
           F+N P L+R   D G    P R D  +      +     + VV+           +   A
Sbjct: 199 FSNTPPLKRFRGDAGMTQMPLRSDTSIESITASQQPTWDENVVITSSPFNPNRNAYSYGA 258

Query: 166 PWEQFPNFRANPVTA 122
              Q+P   A P+ +
Sbjct: 259 N-SQYPIIAATPLNS 272


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 244 YDDEQKRVVVEPLELAQEFRRFELSAPWEQFP 149
           YD  +K VV   L LAQ  RR    AP+ + P
Sbjct: 396 YDYFKKNVVDLHLNLAQVLRRVSPDAPFTKLP 427


>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 193 EFRRFELSAPWEQFPNFRANPVTAGSSEP 107
           E   ++L A W  FP    +PV  G+  P
Sbjct: 143 ELLTYQLFAKWRNFPRIDFSPVLQGNRGP 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,779
Number of Sequences: 5004
Number of extensions: 57154
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)