Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_K22
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine r...    31   0.60 
AF078157-16|AAG24082.1|  343|Caenorhabditis elegans Serpentine r...    28   5.6  
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    27   9.8  

>AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine
           receptor, class i protein32 protein.
          Length = 321

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
 Frame = -3

Query: 571 YRAMGIITL---VIALWLLMF--YSLN*IKYAYLMYDVRMCLFNLELSMI*ESMPL 419
           Y ++G I+L   VI + L++F  Y L+  KY  L Y V    + L+L+++ + MPL
Sbjct: 15  YYSIGFISLIFNVITILLIVFKSYKLDSFKYYLLAYQVSCANYVLQLTILFQPMPL 70


>AF078157-16|AAG24082.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein89 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 635 YQIFCDFYSFDIDSLRIVFV*I*SYGYYHIG 543
           +  FC F  F  ++L I ++ + S+GY  +G
Sbjct: 69  FNFFCTFQDFQFNTLTIPYIFLPSFGYLGLG 99


>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 2 protein.
          Length = 1274

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 135 LKSSNDWYDVSKKKLTISKSCKF*NKNFFY*LILILC 245
           L+S  DW+ ++   L + K C+     FF+  ++I C
Sbjct: 802 LRSPVDWFKLAIAPLLLKKICRIWIATFFFVSLIIAC 838


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,803,544
Number of Sequences: 27780
Number of extensions: 254192
Number of successful extensions: 356
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)