Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_K20
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p...    27   2.9  
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    27   3.9  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   6.7  

>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 353 LMASLEINEENDILEKSIEFLMSNATPP*PSY-LSSRKQVYPG 228
           +MA  EINE ++ + KSIE L +   P   SY L +  ++ PG
Sbjct: 109 MMAVTEINEISNKIPKSIEDLENTLLPQADSYALPALIEIRPG 151


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 239 VYPGTLNRYPGFNHVSDNVTTTGECLFNKYIKSCFFG 129
           V+P     + G N +SDN    G C+   ++ +  FG
Sbjct: 310 VHPMESTFWNGLNRLSDNYEIVGGCICGAFVLAGLFG 346


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
 Frame = -2

Query: 347 ASLEINEENDILEKSIEFLMSNATPP*PSYLSSRKQVYPGTLNR--YPGFNHVSDNVTTT 174
           A   INE N+     +   +S A PP  + L S++  Y   L    YP    V +N  T 
Sbjct: 222 AEQAINEMNNFPLHGVRIQLSWARPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTP 281

Query: 173 GECLFNKYIKS 141
              +   Y KS
Sbjct: 282 FSPINPYYAKS 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,085
Number of Sequences: 5004
Number of extensions: 52248
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)