Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_K16
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0984 - 9985300-9985804,9985894-9986933                           27   10.0 
11_06_0230 + 21528384-21528908,21529017-21529150,21530109-215301...    27   10.0 
04_03_0652 - 18424489-18424525,18424639-18424702,18424796-184248...    27   10.0 

>12_01_0984 - 9985300-9985804,9985894-9986933
          Length = 514

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 219 PQHALSDYIYISIVYEKYWSFET*LIYVWLA 127
           P H  +  +Y+SI  E YW  +  L+  W+A
Sbjct: 13  PYHLKTCLLYLSIFPEDYWISKVDLLLRWIA 43


>11_06_0230 +
           21528384-21528908,21529017-21529150,21530109-21530158,
           21530194-21530726
          Length = 413

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 219 PQHALSDYIYISIVYEKYWSFET*LIYVWLA 127
           P H  +  +Y+SI  E +W  +  LI+ W+A
Sbjct: 374 PSHLKTCMLYLSIYPEDHWIEKDSLIWKWIA 404


>04_03_0652 -
           18424489-18424525,18424639-18424702,18424796-18424869,
           18425809-18425924,18426078-18426343,18427659-18427749
          Length = 215

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 444 PAFIHWKLXVSAYIQTSIFFDLVLWDLVQL 355
           P ++HW   +S ++QT ++ D   + L  L
Sbjct: 176 PHYVHWITWISGFVQTLLYADFFYYYLNSL 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,673,430
Number of Sequences: 37544
Number of extensions: 175297
Number of successful extensions: 327
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)