Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_K08
(304 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 26 1.1
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 24 5.6
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 23 7.5
SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit |Schizos... 23 7.5
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 23 7.5
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 23 7.5
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 23 9.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 23 9.9
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 23 9.9
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 23 9.9
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 1.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 38 TYLCNKXDYFIFLQNKNGVYFGVD 109
T + N+ D + + N NGVY G+D
Sbjct: 459 TAIRNQLDLLVIVINNNGVYHGLD 482
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 23.8 bits (49), Expect = 5.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 167 LSNLIPSPMMYNHYNVSKVSPLQSKLHFYFEEK*SN 60
L N P M N N++ VSP + F EEK +N
Sbjct: 152 LVNNSVEPQMENTANITIVSPSLKESDFESEEKATN 187
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 23.4 bits (48), Expect = 7.5
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -3
Query: 227 NFPT*LFKNPMVTVHTCSSSLSNLIPSPMMYNHYNVSKVSPLQSKLHFYFEEK*SNXLCY 48
N PT ++ + T T SSS +IP+ + V L+ ++ Y N CY
Sbjct: 160 NNPTTVYSGTVATTETFSSSTVVVIPTAI------CDGVRGLEYAVYDYTISSSMNEFCY 213
Query: 47 -KDR*TLMFLFSE 12
K+ T +F F+E
Sbjct: 214 PKNGQTDVFAFNE 226
>SPAC6F6.05 |||oligosaccharyltransferase epsilon subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 122
Score = 23.4 bits (48), Expect = 7.5
Identities = 9/39 (23%), Positives = 23/39 (58%)
Frame = +2
Query: 74 LQNKNGVYFGVD*LSTHYNDYTSLGLELS*IMMNYMYVL 190
+ +K+G++ + + T YN+ T+L L+ + ++ V+
Sbjct: 1 MSSKSGLFLPLSSVITSYNENTNLSLKTIDAFLGFLVVV 39
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 23.4 bits (48), Expect = 7.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 176 SSSLSNLIPSPMMYNHYNVSKVSPLQSKLHFYFEEK*SNXLCYK 45
++ L LI M+Y++Y S L + + Y EE+ +N L K
Sbjct: 242 NAPLEVLIHHVMLYHYYPSFLQSALWTAVSSYLEERCNNGLYSK 285
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 23.4 bits (48), Expect = 7.5
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -3
Query: 227 NFPT*LFKNPMVTVHTCSSSLSNLIPSPMMYNHYNVSKVSPLQSKLHFYFEEK*SNXLCY 48
N PT ++ + T T SSS +IP+ + V L+ ++ Y N CY
Sbjct: 160 NNPTTVYSGTVATTETFSSSTVVVIPTAI------CDGVRGLEYAVYDYTISSSMNEFCY 213
Query: 47 -KDR*TLMFLFSE 12
K+ T +F F+E
Sbjct: 214 PKNGQTDVFAFNE 226
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 23.0 bits (47), Expect = 9.9
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +1
Query: 235 KGHSIYDDKIIL 270
KGH Y+DK+I+
Sbjct: 212 KGHDTYEDKVII 223
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 23.0 bits (47), Expect = 9.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 161 NLIPSPMMYNHYNVSKVSPLQSKLHF 84
NL+P +YN +S SP +K+ +
Sbjct: 97 NLVPGESVYNEKRISVDSPDGTKVEY 122
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 23.0 bits (47), Expect = 9.9
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +3
Query: 90 EFTLEWTNFRHIIMIIHHW 146
EF+ W + R++I+ H W
Sbjct: 2236 EFSKIWESMRYLILFKHAW 2254
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 23.0 bits (47), Expect = 9.9
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 130 IIMCRKLVHSKVNSIFILKKNKVIXFVTKIGRP 32
+++ +VHSK + I ILK K T +GRP
Sbjct: 1111 VMLPEVVVHSKDDDISILKNTK----YTLVGRP 1139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,206,168
Number of Sequences: 5004
Number of extensions: 22256
Number of successful extensions: 63
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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