Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_K08
         (304 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical p...    30   0.37 
AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical ...    30   0.37 
Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical pr...    28   1.5  
Z82261-7|CAH60757.2|  300|Caenorhabditis elegans Hypothetical pr...    27   2.6  
L15314-4|AAF99988.2|  618|Caenorhabditis elegans Hypothetical pr...    26   4.5  
AC024819-1|AAF59589.1|  223|Caenorhabditis elegans Hypothetical ...    25   7.9  

>Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 180 CMYCNHRIFK*LSGKIILERTLNLRRQNNITCCN 281
           C+ CNH++ K ++ +  +E+  N+R   N  CCN
Sbjct: 338 CVLCNHQMPKTVTVQEHMEKEHNIRLVFNCRCCN 371


>AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 180 CMYCNHRIFK*LSGKIILERTLNLRRQNNITCCN 281
           C+ CNH++ K ++ +  +E+  N+R   N  CCN
Sbjct: 338 CVLCNHQMPKTVTVQEHMEKEHNIRLVFNCRCCN 371


>Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical
           protein C44H4.1 protein.
          Length = 586

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 200 PMVTVHTCSSSLSNLIPSPMMYNHYNVSKVSPLQSKL 90
           PM+T    SS+    +PS ++Y+     K SP+Q KL
Sbjct: 369 PMLTSLDLSSNRLESLPSNVIYDSLMQKKTSPVQRKL 405


>Z82261-7|CAH60757.2|  300|Caenorhabditis elegans Hypothetical
           protein C35D6.10 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 280 LQHVILFCRRKLSVLSNIIFPLNYLKIRWLQYI 182
           +Q +ILFC    SVLS+++      KIR L Y+
Sbjct: 177 IQAIILFCMAMSSVLSSLLHLSILNKIRKLAYL 209


>L15314-4|AAF99988.2|  618|Caenorhabditis elegans Hypothetical
           protein K06H7.3 protein.
          Length = 618

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 200 PMVTVHTCSSSLSNLIPSPMMYNHYNVSKVS 108
           P++  H C   L    P+P  Y+HYN    S
Sbjct: 580 PILRCHQCGVQLP---PTPFQYSHYNFCSTS 607


>AC024819-1|AAF59589.1|  223|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.1 protein.
          Length = 223

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 203 NPMVTVHTCSSSLSNLIPSPMMYN 132
           +P    HT SS L+N +P+P + N
Sbjct: 6   SPSPIQHTTSSFLNNFMPTPSLIN 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,566,673
Number of Sequences: 27780
Number of extensions: 120501
Number of successful extensions: 252
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)