Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_K07
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64835-1|AAO25997.1|  335|Caenorhabditis elegans Serpentine rece...    31   0.41 
Z70684-9|CAA94605.1|   95|Caenorhabditis elegans Hypothetical pr...    31   0.54 
U40029-15|ABD94114.1| 1824|Caenorhabditis elegans Hypothetical p...    27   8.7  
U40029-14|ABD94112.1| 2025|Caenorhabditis elegans Hypothetical p...    27   8.7  
U40029-13|ABD94113.1| 1884|Caenorhabditis elegans Hypothetical p...    27   8.7  

>U64835-1|AAO25997.1|  335|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 28 protein.
          Length = 335

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 29/115 (25%), Positives = 51/115 (44%)
 Frame = -3

Query: 468 TCNFNILNTYMYK*TNYVIENNVLNFGCSL**NLLEDQNNIKLENYATLRMTKLMEWISL 289
           T  F +LNT  ++ T+YV         C     LL+D + I    Y +    +L + +S 
Sbjct: 76  TLYFLVLNTSFFRVTSYVRPV------CEFLVPLLKDPSYILTPFYTSYMYAQLAKMLST 129

Query: 288 CSAFFAVWYSLIGGYVKHPLIQENMHQIVLSPIYFLILFGLYSVSVILFRVLTFN 124
             A     Y+ +   V+H +I        ++ I+ + LFG++ V++     L FN
Sbjct: 130 L-AMSINRYTSVNNPVQHKMIWMKYSSKAIALIFIIPLFGVWPVAIGNTSFLPFN 183


>Z70684-9|CAA94605.1|   95|Caenorhabditis elegans Hypothetical
           protein F28D1.11 protein.
          Length = 95

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = -3

Query: 228 IQENMHQIVLSPIYFLILF-GLYSVSVILFRVLTFNNC 118
           + E +H +V    +F +LF G+Y+V  +++ V TFN+C
Sbjct: 33  LPECLHCLVNYAPFFAVLFLGIYAVFNVVYGVATFNDC 70


>U40029-15|ABD94114.1| 1824|Caenorhabditis elegans Hypothetical
            protein F10G7.10c protein.
          Length = 1824

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 246  SLLLENTKRRKMLNRGISIPLVLSSLKWRNFQVLYCFDLQVG 371
            ++L++N    K + R I+  ++ +SL W +   L C  L+ G
Sbjct: 1667 AVLIDNQSLTKDIQREIAQNMIFASLGWVSSYTLLCLILRTG 1708


>U40029-14|ABD94112.1| 2025|Caenorhabditis elegans Hypothetical
            protein F10G7.10a protein.
          Length = 2025

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 246  SLLLENTKRRKMLNRGISIPLVLSSLKWRNFQVLYCFDLQVG 371
            ++L++N    K + R I+  ++ +SL W +   L C  L+ G
Sbjct: 1667 AVLIDNQSLTKDIQREIAQNMIFASLGWVSSYTLLCLILRTG 1708


>U40029-13|ABD94113.1| 1884|Caenorhabditis elegans Hypothetical
            protein F10G7.10b protein.
          Length = 1884

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 246  SLLLENTKRRKMLNRGISIPLVLSSLKWRNFQVLYCFDLQVG 371
            ++L++N    K + R I+  ++ +SL W +   L C  L+ G
Sbjct: 1667 AVLIDNQSLTKDIQREIAQNMIFASLGWVSSYTLLCLILRTG 1708


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,681,620
Number of Sequences: 27780
Number of extensions: 193487
Number of successful extensions: 409
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)