Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_K01
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    28   1.2  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    28   1.6  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    27   2.7  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   4.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.3  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   8.3  

>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 492 LILN*CSLYNCVVVKKYFIMFDRDFKCKRKNDLLFVFIKYLQ 367
           LI+  CSL++ V  K+Y I   ++   K K DL  +   YL+
Sbjct: 70  LIVGPCSLHDPVAAKEYAIRLQKE-AIKHKKDLHIIMRAYLE 110


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
 Frame = -2

Query: 452 LKNILSCLI-EILNV-SVKMTYYLC-L*SICSAVSDVV*SVKILRNGIIFKYYYLVYNND 282
           LKN   CLI    NV S+ +  YL  +   C A +DV  SV I  + I+  +++ V+ N 
Sbjct: 65  LKN--PCLIFSAKNVPSISIQAYLTRILKYCPATNDVFLSVLIYLDRIVHHFHFTVFINS 122

Query: 281 -----FAVIGKRVASLFFKN 237
                F + G   AS FF +
Sbjct: 123 FNIHRFLIAGFTAASKFFSD 142


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 389 NNKSFLRLHLKSLSNMIKYFLTTTQLYSEH 478
           N+  FLRLHL+S++   ++      LY +H
Sbjct: 78  NDYEFLRLHLQSITKYDEFMNKLWNLYQKH 107


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 99  LHTFYCIIIFLPXIIQSLCSLSVYIGFKSTCH 194
           L TF+C  + LP I + + +L+  IG   T H
Sbjct: 96  LLTFFCWTVLLPLIFKHVWNLNFKIGDTYTIH 127


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 419 KSLSNMIKYFLTTTQLYSE--H*FNIKYQQRPCVFYEFYIKKLNMNRQGTQ*HMIHVLFV 592
           KSLSN++  +L TT+   +  H    K       F++FY + L  +R   Q H   VLFV
Sbjct: 251 KSLSNLVNVWLKTTRSLIKLFHDQISKTALEEFNFWQFYYRSL--SRLNDQLHSRPVLFV 308


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 346 YTTSDTALQILYKHK**VIFTLTFKISIKHDKI 444
           Y +S  +L +LYK    ++   T+KI+++  +I
Sbjct: 178 YNSSRPSLAVLYKDSKSIVHLSTYKINVREQEI 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,897
Number of Sequences: 5004
Number of extensions: 55596
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)