Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_J24
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   7.1  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   7.1  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   7.1  
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch...    25   9.4  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   9.4  

>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 346 LQPATMRWRILLTXVSVCTAIAAYHWLMDPL 254
           LQ       IL     VC A+AA H+L  PL
Sbjct: 153 LQHRLTEGEILKILADVCDAVAAMHYLDPPL 183


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 347 SPTSYNEMENSTDXXVSLYSNSSIPLVDGSSDTCSLAHTVFVESSLF 207
           S +S  ++   T   +S  S S  P  DGS D+  +AH  +  S  F
Sbjct: 241 SHSSIGDLTTITQSSISSGSGSFKPSWDGSFDSSLMAHQSYGTSPAF 287


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +2

Query: 341 LETCYHFS*TTLKSFQ-ICNYDYSV--SLIIKGYL 436
           +E C+HFS T L   + +  YD+ +  S++  GYL
Sbjct: 423 IEHCFHFSQTVLSGLRYLQRYDWLLLRSIVFFGYL 457


>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 213

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 166 GVHRKVVAPSIITARTRSILNDFNMSCDD 80
           G+ R + +  +  A T SI+N F   C D
Sbjct: 44  GIIRAITSQKLSDAATNSIINKFCTQCSD 72


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
 Frame = -3

Query: 359 SDSMSPTSYNEM-ENS--TDXXVSLYSNSSIPLVDGSS------DTCSLAHTVFVESSLF 207
           S +   T Y+++ EN   TD    L + SSI +   SS      +T S+ HT+  E+ L 
Sbjct: 135 SSNFGQTRYDQVPENPQITDWDEGLENESSISIAHDSSRLNRSTETSSVQHTLITEADLL 194

Query: 206 CCDLYII 186
               Y++
Sbjct: 195 SSISYVL 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,362
Number of Sequences: 5004
Number of extensions: 41629
Number of successful extensions: 94
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)