Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_J24
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0458 - 17400447-17400614,17400681-17400737,17401154-174012...    27   9.7  
07_03_0170 + 14679746-14679936,14680111-14680208,14680460-146806...    27   9.7  

>08_02_0458 -
           17400447-17400614,17400681-17400737,17401154-17401283,
           17401431-17401435
          Length = 119

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +3

Query: 318 ILHLIVAGWRHAITSVKRRSKAFKSVIMTTQYH*S*RVIYQNRND 452
           I++  V  W+H+   +     A+K ++ + Q H + + +++ RND
Sbjct: 9   IMNCFVGTWKHSKNGICNTKSAYKEIMKSDQIH-NFQQLWKARND 52


>07_03_0170 +
           14679746-14679936,14680111-14680208,14680460-14680605,
           14680933-14680977
          Length = 159

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 220 NHPFFAVTSTLLVLLFMIGV 161
           NHP  A T+T+L+LL ++GV
Sbjct: 2   NHPSSAATATVLLLLALLGV 21


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,583,567
Number of Sequences: 37544
Number of extensions: 227203
Number of successful extensions: 453
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)