Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_J23
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    27   1.8  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    26   4.1  
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo...    25   7.2  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   9.5  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    25   9.5  

>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 85  EFWKIVKNSGV*PVAFNFDISSIFGSSGRVGKLILFPTCVVL 210
           +FWK +KN+       NF   SIF ++G  G L  FP+   L
Sbjct: 66  DFWKAIKNAKN-ASDINFSDYSIFFAAGGHGTLFDFPSATNL 106


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 111 GVFDNFPKLNLWSCAIKCIFDFKYWNCVL 25
           G    F K+  +     C+F F YW C L
Sbjct: 110 GQMSQFQKVMSYFPPTACLFSFDYWGCGL 138


>SPAC1399.04c |||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 135 IECNRLYTGVFDNFPKLNLWSCAI 64
           I CN   T VF  FPKL + + +I
Sbjct: 172 IACNEGITNVFAKFPKLRMVTASI 195


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 588 NHTEDRFKINHVCF 629
           +H  D F INHVCF
Sbjct: 940 SHCGDLFAINHVCF 953


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 198 LCRIIVSAYFASIDSYNLNTRYRMGIIVRCNKPYSFFTLC 317
           LC I+ +    ++ S +LNT+    IIV  +  YS F LC
Sbjct: 104 LCEILNAR---NVISCSLNTQKFFFIIVAASNVYSIFQLC 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,999
Number of Sequences: 5004
Number of extensions: 54980
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)