Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_J22
(440 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974... 29 2.2
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 28 2.9
10_08_0132 + 15087274-15087797,15089544-15089732,15090048-150901... 28 2.9
08_02_0651 - 19714348-19714395,19715319-19715429,19715503-197155... 28 2.9
08_01_0359 + 3152483-3152857,3154493-3154855,3155133-3155211,315... 28 2.9
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 28 3.8
03_04_0124 - 17480282-17480647 28 3.8
01_06_1728 + 39480252-39480450,39480552-39481224,39481554-394816... 28 3.8
06_01_0213 + 1628974-1629339,1629441-1629590,1630935-1631095,163... 27 5.1
09_04_0253 + 16116614-16116671,16117194-16117258,16117596-161176... 27 6.7
08_01_0030 + 222748-222829,223224-223448,223800-224204,224773-22... 27 6.7
07_01_0076 + 562248-562430,562540-562637,562887-562954,563376-56... 27 6.7
10_08_0094 + 14757470-14757808,14757826-14758563 27 8.8
07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026 27 8.8
04_03_0789 + 19660713-19660896,19661405-19662027 27 8.8
>09_06_0061 + 20596360-20596618,20597039-20597158,20597329-20597462,
20597578-20597730,20597816-20597927,20598022-20598352,
20598524-20598737,20598842-20598931,20599669-20599924,
20600029-20600141,20600733-20600831,20600915-20600980,
20601018-20601167,20601278-20601368,20601710-20601749,
20603888-20605247,20605478-20605507,20605834-20605885,
20606264-20606397,20606513-20606665,20607089-20607202
Length = 1356
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 285 AVSNSRIFVYSPLGETDWLADVIEYKFHCNISSDRRN*LT-SFIENIIFHYT 437
++SN+ +P W A + +YK C I + +R T S + I+F YT
Sbjct: 1294 SLSNASYLSGNPPEIVVWSASLYDYKISCAIDASKRTHNTVSNLNEILFSYT 1345
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 122 QESTHATDPLIITSLKNYNLFRYVLSMKVSPPQPAPSRGGAASLA 256
Q S + +PL++T LK N+ + + PP P+ + A++L+
Sbjct: 875 QPSDNQNNPLVVTQLKLANIEKRAPRVPRPPPAPSATANTASALS 919
>10_08_0132 +
15087274-15087797,15089544-15089732,15090048-15090186,
15090454-15090594,15091420-15091569,15091908-15092011,
15092258-15092432,15092714-15092823,15092906-15093073,
15093180-15093345,15093771-15094049,15094445-15094543,
15094619-15094676,15095145-15095336,15095693-15095724,
15096023-15096117,15096321-15096426
Length = 908
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 197 SMKVSPPQPAPSRGGAAS 250
S K +PPQP P RGG A+
Sbjct: 812 SDKEAPPQPVPGRGGGAT 829
>08_02_0651 -
19714348-19714395,19715319-19715429,19715503-19715572,
19716081-19716178,19716272-19716319,19716391-19716446,
19718191-19718314,19718417-19718506
Length = 214
Score = 28.3 bits (60), Expect = 2.9
Identities = 9/42 (21%), Positives = 22/42 (52%)
Frame = +2
Query: 95 GRNKYQPYVQESTHATDPLIITSLKNYNLFRYVLSMKVSPPQ 220
G++K+ +++ ++ + NY LF + L + + PP+
Sbjct: 92 GKSKHYGFIEFENPEVAKIVADEMNNYLLFEHTLQIAIVPPE 133
>08_01_0359 +
3152483-3152857,3154493-3154855,3155133-3155211,
3155473-3155879,3156342-3156497,3156728-3156895,
3156991-3157131,3157739-3157966,3158063-3158176,
3158293-3158448
Length = 728
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 209 SPPQPAPSRGGAASLAETAFHKSTSSG 289
+PP P P GGAA HK T+ G
Sbjct: 33 APPTPEPEAGGAAVAVAGVLHKWTNYG 59
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 122 QESTHATDPLIITSLKNYNLFRYVLSMKVSPPQPAPSRGGAASL 253
Q S + +PL++T LK N+ + + PP P+ + A++L
Sbjct: 570 QPSDNQNNPLVVTQLKLANIEKRAPRVPRPPPAPSATANTASAL 613
>03_04_0124 - 17480282-17480647
Length = 121
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 227 PSRGGAASLAETAFHKSTSSGV*LTDIRLQSPWRNRLAR 343
P R GAA+L ET H+ T G WRN + R
Sbjct: 13 PGRDGAAALVETLDHQDTDCGDDGGGSADDDGWRNNVQR 51
>01_06_1728 +
39480252-39480450,39480552-39481224,39481554-39481638,
39481731-39481820,39481953-39482026,39482421-39482505,
39482582-39482668,39482797-39482927,39483642-39483723,
39483810-39483857,39484793-39484912
Length = 557
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 209 SPPQPAPSRGGAASLAETAFHKSTSSGV*LTDIRLQSPWRNRL 337
SPP PS GG AS A + S + G R P R RL
Sbjct: 12 SPPPLPPSEGGEASGAPSTSSPSDADGGGKPSPRTSKPGRKRL 54
>06_01_0213 +
1628974-1629339,1629441-1629590,1630935-1631095,
1631178-1631892,1632045-1632091,1632295-1632316
Length = 486
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 188 YVLSMKVSPPQPAPSRGGAASLAETAFHKSTSSGV 292
Y+ + SPP P S A++ A + H+S S G+
Sbjct: 34 YIKRNRASPPPPPGSPTAASAAAVSPIHRSLSRGL 68
>09_04_0253 +
16116614-16116671,16117194-16117258,16117596-16117663,
16120032-16120138,16120429-16120478,16120552-16120634,
16120708-16120800,16122349-16122379,16122428-16122521,
16122563-16122612
Length = 232
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 75 LDSAHQTETQIEXKCTGKLFCLT 7
L++AH+ + ++E C G L C T
Sbjct: 88 LEAAHENDIELEGACEGSLACST 110
>08_01_0030 +
222748-222829,223224-223448,223800-224204,224773-225389
Length = 442
Score = 27.1 bits (57), Expect = 6.7
Identities = 16/70 (22%), Positives = 30/70 (42%)
Frame = +2
Query: 14 QNNFPVHXISICVSVW*AESRXCGASAGRNKYQPYVQESTHATDPLIITSLKNYNLFRYV 193
++ F + + ++ W C A +P EST +I S ++ L +
Sbjct: 236 RHKFHATCVDMWLTSWKTFCPVCKRDASAGTSKPPASESTPLLSSVIHLSAESTALSSFR 295
Query: 194 LSMKVSPPQP 223
++ VSPP+P
Sbjct: 296 STVAVSPPRP 305
>07_01_0076 +
562248-562430,562540-562637,562887-562954,563376-563421,
563661-563767,563978-564027,564120-564202,564705-564819
Length = 249
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 75 LDSAHQTETQIEXKCTGKLFCLT 7
L++AH+ + ++E C G L C T
Sbjct: 156 LEAAHENDIELEGACEGSLACST 178
>10_08_0094 + 14757470-14757808,14757826-14758563
Length = 358
Score = 26.6 bits (56), Expect = 8.8
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = +2
Query: 80 CGASAGRNKYQPYVQESTHATDPLIITSLKNYNLFRYVLSMKVSPPQPAPSRGGAASLAE 259
C + ++ Y ++ H D + +K LFR++ + PP S L E
Sbjct: 61 CYPNGSKSDYSDFISLFLHLDDGQVTKQVKAQYLFRFLDELDDKPPPSLTSE--QRRLGE 118
Query: 260 TAFHK 274
T F K
Sbjct: 119 TKFIK 123
>07_03_0932 + 22726529-22727338,22729097-22729462,22729841-22730026
Length = 453
Score = 26.6 bits (56), Expect = 8.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 194 LSMKVSPPQPAPSRGGAASLAETAFHKSTSSGV*LTDIRLQSPWRNRLAR 343
LS+ V+P +P+ + A+ AE A+ ++ L + Q WR R
Sbjct: 144 LSLVVNPIRPSAAAANASDAAEPAYSDESTQEELLVWLERQPYWRRHQGR 193
>04_03_0789 + 19660713-19660896,19661405-19662027
Length = 268
Score = 26.6 bits (56), Expect = 8.8
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +2
Query: 107 YQPYVQESTHATDPLIITSLKNYNLFRYVLSMKVSPPQPAPSRGGAASLAETAFHKSTSS 286
Y P+ +T ++ + +S F ++ PP P PS G ++ A + S SS
Sbjct: 191 YMPFGGAATMSSSTVSSSSAPQILDFSTQQLIRAGPPSPMPSSGSGSATAAASSTTSASS 250
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,780,079
Number of Sequences: 37544
Number of extensions: 167870
Number of successful extensions: 617
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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