Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_J22
         (440 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   0.29 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   4.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   7.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect(2) = 0.29
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 152 IITSLKNYNLFRYVLSMKVSPPQPAP 229
           +  +L  Y L   VL    +PP+PAP
Sbjct: 318 VFMALMEYCLVNIVLGDSDTPPKPAP 343



 Score = 20.2 bits (40), Expect(2) = 0.29
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 203 KVSPPQPAPSRGGAAS 250
           K +PP P PS  G  S
Sbjct: 340 KPAPPPPPPSSSGPDS 355


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 342 ADVIEYKFHCNISSDRRN*LTSFIENI 422
           +D+ +YK  CN+ + +   L   +E+I
Sbjct: 195 SDIEKYKMFCNLENVKLKELRIILEDI 221


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 85  RVRRPQ*ISTLCTGVHTRDRSPHNNLFKKL 174
           R + P+ IS+L    +  +   +NN +KKL
Sbjct: 297 RSKEPKIISSLSNSCNYSNNYYNNNNYKKL 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,922
Number of Sequences: 438
Number of extensions: 1784
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)