Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_J18
(456 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy... 118 3e-28
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|... 28 0.59
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos... 27 1.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 1.4
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 26 2.4
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 25 5.5
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 7.3
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 24 9.6
SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual 24 9.6
>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 118 bits (285), Expect = 3e-28
Identities = 53/89 (59%), Positives = 64/89 (71%)
Frame = -2
Query: 323 LVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNIIHGSDSV 144
LV +M+SGPV M+WEG VKTGR MLGA+NP DS PGTIRGD I +GRN+ HGSDS+
Sbjct: 63 LVGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSI 122
Query: 143 ESAKKEIGLWFTDKEVVGWTPANENWVYE 57
ESA +EI LWF E+ + E W+YE
Sbjct: 123 ESANREIKLWFQPSEIQVYDRTIEPWIYE 151
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 445 IIEXFEKKGFQLVGLKXVXPSEEL 374
II FE KG++L LK + PS +L
Sbjct: 23 IISKFELKGYKLRALKFLVPSRDL 46
>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
L37|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 28.3 bits (60), Expect = 0.59
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -2
Query: 368 SNTTAIWHPALSSPGLVK--YMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRG 195
SNT + SS LVK Y+SS + + +++ T+ + PGTI
Sbjct: 25 SNTLVLRSSRNSSSSLVKRSYVSSRVSPKKPQHNSDATSSAQKVANKTHTSSVLPGTILK 84
Query: 194 DLCIQVG 174
LCI+ G
Sbjct: 85 GLCIKAG 91
>SPCC1235.12c |mug146||meiotically upregulated gene
Mug46|Schizosaccharomyces pombe|chr 3|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 1.4
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 96 NFFVRKPEAYFLFSRFNAVRTMDDVTPNLNAEITADSAGLRVSWVSC-AKHLTASLHNIK 272
N FV P R + RT+ TP+L E ++ R+S V C H +S N
Sbjct: 5 NTFVDYPTTQVRKERVHTYRTLTSATPSL--EFFSNENTNRLSEVQCKLTHFLSSSENSS 62
Query: 273 ALPYHRDHR 299
++ R H+
Sbjct: 63 SVRNTRTHK 71
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 1.4
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = -2
Query: 380 RTFSSNTTAIWHPALSSPGLVKYMSSGPVVPMVWEG----LNVVKTGRQMLGATNPAD 219
R FS N + W L PG V+ + G + +EG L+ V+ R+++ N D
Sbjct: 97 RMFSENGSLTWQELLRQPGKVQGSNKGDRLTKTFEGFRNQLDKVQFIRKLMSKANVDD 154
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 26.2 bits (55), Expect = 2.4
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = -2
Query: 323 LVKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPADSQP--GTIRGDLCIQVGR--NIIH 159
L++ P++ V GL +++ G ++ T+P+ GT+ GD C+++G NI+H
Sbjct: 349 LLRLKDKHPLIVDV-RGLGLLQ-GIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVH 405
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 5.5
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = -2
Query: 293 VPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRNI----IHGSDSVESAKKE 126
+ V EG N + GRQ+L T+P + + +G I H SD + + +
Sbjct: 388 ITWVSEGANTMDRGRQLLEVTHPRGRLDAGTMSTMGVGMGYAIASAFAHSSDKIVVVEGD 447
Query: 125 IGLWFTDKEV 96
F+ E+
Sbjct: 448 SAFGFSAMEL 457
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 24.6 bits (51), Expect = 7.3
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Frame = -2
Query: 371 SSNTTAIWHPA------LSSPGLVKYMSSGPVVPMVWEGLNV-VKTGRQMLG 237
S + +WH A L+ GL+KY ++P++ GL+ V+ G ++ G
Sbjct: 375 SITSPLVWHGAILFFAKLAGAGLIKYSKCLHILPLIEVGLSYEVRYGTRVTG 426
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 24.2 bits (50), Expect = 9.6
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 223 AGLVAPSI*RPVFTTLRPSHTIGTTGPELMYFTRPGEERAGCQIAVVL 366
+G + P RP T+L P T+ TT + RP + ++ +L
Sbjct: 358 SGSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSKSPSVSNIL 405
>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 24.2 bits (50), Expect = 9.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 135 SRFNAVRTMDDVTPNLNAEITADS 206
SR NAV T DD P + E ADS
Sbjct: 28 SRANAVETFDDAFPG-DGETQADS 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,927,207
Number of Sequences: 5004
Number of extensions: 37311
Number of successful extensions: 88
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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