Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_J18
         (456 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   2.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   4.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   4.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
 Frame = -2

Query: 149  SVESAKKEIGLW-------FTDKEVVGWTPANENWVYE*IYFNL 39
            +VE+AK    +W        TD+    WT  NE +V   +Y NL
Sbjct: 1082 NVETAKTNEEMWELIDTEKLTDRLPYPWTMDNERYVKVDMYMNL 1125


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 324 TRGRKGGMPNRCSVAGKS 377
           + G++G  P RC++ GK+
Sbjct: 83  SHGKEGEDPYRCNICGKT 100



 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +3

Query: 324 TRGRKGGMPNRCSVAGKSSSDGH 392
           TR   G  P  C + GKS    H
Sbjct: 223 TRTHTGEKPYTCDICGKSFGYNH 245


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 277 SHTIGTTGPELMYFTRPGEER 339
           +H  G+T     YF+RP E+R
Sbjct: 88  NHLYGSTPDSRDYFSRPFEKR 108


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 11/47 (23%), Positives = 22/47 (46%)
 Frame = -2

Query: 308  SSGPVVPMVWEGLNVVKTGRQMLGATNPADSQPGTIRGDLCIQVGRN 168
            S+  V  +   G  +V +G+Q  G      +QP T++  +  +  +N
Sbjct: 909  SNSQVQGVAVPGSGIVASGQQHAGGWQSIYAQPQTVQDQIVSEYYQN 955


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +1

Query: 106 SVNQRPISFLADSTLSEPW 162
           S+N+  ++++AD  L++ W
Sbjct: 43  SINEESMTYVADIFLAQSW 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,048
Number of Sequences: 438
Number of extensions: 2558
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12066642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)