Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_J11
         (928 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    30   2.7  
Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 364 VCVSTIRMLPKSKRLMLRTMANLTGTQLLCQFCRRKIMKSHLKGF 230
           VC + +   PK+K+ M+     +TG  ++CQF + ++M     GF
Sbjct: 129 VCCTKLPTCPKTKKTMVNF---ITGKPIMCQFKQGRVMPCPENGF 170


>Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical
           protein F53F8.1 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 548 SVIQSCSSFSYLFFLHFQSHPQLGELQHYAILLHTSDASSLLCVVFWT 691
           + I +CSSF Y  FL  +       L  +++  H SD S +   +FW+
Sbjct: 2   TTIYTCSSFLYFLFLGGKK-----SLLKFSVCYHRSDRSGVTTPLFWS 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,730,389
Number of Sequences: 27780
Number of extensions: 235768
Number of successful extensions: 786
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)