Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_J10
         (328 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   5.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   6.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   6.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   8.8  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +1

Query: 52  FYLIKCNKNMVMRMSMRSMQPENMQSTQSTPGVR 153
           FY++   K +   +  + +QP+  QS    PGV+
Sbjct: 420 FYMLY-QKILSYFLRYKKLQPQYSQSELQMPGVK 452


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 10/42 (23%), Positives = 16/42 (38%)
 Frame = +1

Query: 100 RSMQPENMQSTQSTPGVRCTQQRPEQYMQQLQGTCSSPAEAW 225
           R+  P    S      VR ++   E+Y ++       P E W
Sbjct: 589 RNFMPGRGISKFGGEDVRESEAFAEEYTEEAYSVAQEPEEEW 630


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +1

Query: 100  RSMQPENMQSTQSTPGVRCTQQRPEQYMQQLQ 195
            +  QP+  Q  Q     +   Q+P+Q   Q Q
Sbjct: 1501 QQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQ 1532



 Score = 19.8 bits (39), Expect = 8.8
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +1

Query: 100  RSMQPENMQSTQSTPGVRCTQQRPEQYMQQ 189
            +S QP+  Q        +  QQ+P+Q  ++
Sbjct: 1520 QSQQPQQQQPQPQQQQQQQQQQQPQQQQKE 1549


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 100 RSMQPENMQSTQSTPGVR 153
           + +QP+  QS    PGV+
Sbjct: 435 KKLQPQYSQSELQMPGVK 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,514
Number of Sequences: 438
Number of extensions: 593
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)