Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_J09
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    26   2.2  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   3.0  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    26   3.0  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   3.9  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.2  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.8  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   6.8  

>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 249 HKYGKKYSLASLSH-ENKCFYNLKIQY*IMKL*VLFMMSMPKILRDQKLC 103
           H +G++  L S++  +N C+  + ++   + L +LF   +  I  +QKLC
Sbjct: 263 HLFGRRCLLPSVTFWQNICYPPIFVKIVDVSLKILFNWDLSNISLNQKLC 312


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 261  IN*KHKYGKKYSLASLSHENK 199
            +N +H YG+ YS ASL+ ++K
Sbjct: 1855 LNFEHTYGRDYSSASLADKSK 1875


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 147 IRPIIS*FNTEFLSYKSIYFHGSVMLDYIF 236
           I P++S F  E+ +YK I++  ++   +IF
Sbjct: 186 IGPVVSGFIAEYTTYKWIFWSTTIFSGFIF 215


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 121 KRSKAVLRFIVCWFCNKM 68
           K+ +A L+ I C FCNK+
Sbjct: 121 KKEEASLKVIYCLFCNKL 138


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 160 FHNLILNF*VIKAFIFMAQ*C*TIFFSIFMFLVYCSSFYIYTFIF 294
           F  L+L F  +  F+  +     +FF   +F+VY SSF I  F+F
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLF 157


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 18  CLTSYVLTFFHLIIN 62
           CL+SY+  FFH + N
Sbjct: 351 CLSSYLCNFFHSVAN 365


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
 Frame = +3

Query: 54  IINSHILLQ-NQQTIN-LNTAFDLLKF 128
           II  H+L+  ++QTI  LNTA D+L F
Sbjct: 642 IILVHLLINPSEQTIEQLNTAIDILNF 668


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,416,882
Number of Sequences: 5004
Number of extensions: 23265
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)