Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_J09
         (441 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92972-3|CAB07488.1|  317|Caenorhabditis elegans Hypothetical pr...    27   8.0  
L09634-1|AAA27967.1|  776|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ...    27   8.0  
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical...    27   8.0  

>Z92972-3|CAB07488.1|  317|Caenorhabditis elegans Hypothetical
           protein T19C9.3 protein.
          Length = 317

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 12  TKCLTSYVLTFFHLIINSHILLQNQQTINLNTAF 113
           T  +T + LTFF L+ N      + QTI L   F
Sbjct: 198 TPIITFFTLTFFQLLENQKTHKYSYQTIQLQKTF 231


>L09634-1|AAA27967.1|  776|Caenorhabditis elegans Hypothetical
           protein C30C11.4 protein.
          Length = 776

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 279 NIKTTAIN*KHKYGKKYS 226
           NIK T IN KH  G+K+S
Sbjct: 59  NIKNTVINFKHLIGRKFS 76


>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
           protein Y57A10A.1 protein.
          Length = 1342

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 33  VLTFFHLIINSHILLQNQQTINLNTAFDLL 122
           +  F H ++ S+I+L     IN  T  DLL
Sbjct: 91  IFEFIHRVMGSNIVLNKDPLINAQTLHDLL 120


>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
           protein Y57A10A.1 protein.
          Length = 1342

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 33  VLTFFHLIINSHILLQNQQTINLNTAFDLL 122
           +  F H ++ S+I+L     IN  T  DLL
Sbjct: 91  IFEFIHRVMGSNIVLNKDPLINAQTLHDLL 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,624,836
Number of Sequences: 27780
Number of extensions: 123139
Number of successful extensions: 257
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)