Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_J02
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1052 + 10821964-10822064,10822434-10822607,10823086-108233...    34   0.087
02_05_0856 - 32272757-32273494,32273578-32273866,32273961-322743...    32   0.35 
02_02_0724 + 13349419-13349641,13349880-13349974,13350366-133506...    30   1.1  
03_02_0112 + 5689439-5689474,5689629-5689778,5690194-5690361,569...    29   1.9  
02_01_0364 + 2615056-2615239,2615573-2615637,2616016-2616103,261...    29   3.3  
02_01_0359 + 2578038-2578221,2578555-2578619,2583179-2583266,258...    29   3.3  
06_03_0808 - 24799383-24801275                                         27   10.0 

>12_01_1052 + 10821964-10822064,10822434-10822607,10823086-10823346,
            10829833-10831798,10832114-10832515
          Length = 967

 Score = 33.9 bits (74), Expect = 0.087
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -2

Query: 409  RLLREAEGWLEGSVHDFSLSSFLGHLDGNRPPELAVDSQLHSLMAESSVDYVAKFADLAA 230
            ++LREA GW  G   +  L   +  L+G +  +  +   L SL A      V+K ADL A
Sbjct: 834  KVLREALGW--GLTGEEILRVAVSGLEGTQDDDWKLQEALASLCATVFNRIVSKDADLTA 891

Query: 229  EVNALAPGL-DGRDAPR 182
              N +A G+ D    PR
Sbjct: 892  RFNNIAAGICDQTTKPR 908


>02_05_0856 -
           32272757-32273494,32273578-32273866,32273961-32274312,
           32275232-32275850
          Length = 665

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
 Frame = +2

Query: 149 RTIGASLKVGGARRVAAVESGGEGVDLC-----GEVGELGHVVHAGLRHQGVQLRVH 304
           R  GA+   GGA R A + + GE          GE GE  H+V  G RHQG +   H
Sbjct: 136 RVGGAAGAAGGAARGAVLGAQGEVPGRAEPVGEGEAGEGAHIVVHGGRHQGARQDAH 192


>02_02_0724 +
           13349419-13349641,13349880-13349974,13350366-13350653,
           13352838-13352963,13353045-13353204,13354142-13354190,
           13354502-13354772,13356071-13356196,13357076-13357231,
           13357815-13358058,13358181-13358627,13359348-13359478
          Length = 771

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +2

Query: 146 HRTIGASLKVGGARR----VAAVESGGEGVDLCGEVGELGHVVHAGL 274
           H  +G+  ++   R+    VA V+    G + CG++GE GH+   G+
Sbjct: 123 HTDLGSCFQLPDTRQKNHGVALVDQRSRGQEQCGDIGEAGHMSCGGI 169


>03_02_0112 +
           5689439-5689474,5689629-5689778,5690194-5690361,
           5691334-5691458,5691914-5692007,5692844-5692942,
           5693730-5693910,5694051-5694166,5694758-5694913,
           5695226-5695354,5695554-5695718
          Length = 472

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 469 KRDADLGSFLPSESMSLSPSRLLREAEGWLEGSVHDFSLS 350
           K    L   L      + PS  L E +GW++  + DFS+S
Sbjct: 94  KYQHQLEDLLTKNPNFVRPSHRLNEVQGWVKSGLRDFSIS 133


>02_01_0364 +
           2615056-2615239,2615573-2615637,2616016-2616103,
           2616202-2616269,2616653-2616703,2617168-2617285,
           2617463-2617509,2617603-2617629,2617806-2617881,
           2618157-2618296,2618623-2618721
          Length = 320

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 185 RRVAAVESGGEGVDLCGEVGELGHVV 262
           R  A +E  G+ +DL G+VG +G ++
Sbjct: 150 RSKALIECDGDSIDLSGDVGAVGRII 175


>02_01_0359 +
           2578038-2578221,2578555-2578619,2583179-2583266,
           2583365-2583432,2583816-2583866,2584331-2584448,
           2584626-2584672,2584766-2584792,2584969-2585044,
           2585320-2585483
          Length = 295

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 185 RRVAAVESGGEGVDLCGEVGELGHVV 262
           R  A +E  G+ +DL G+VG +G ++
Sbjct: 150 RSKALIECDGDSIDLSGDVGAVGRII 175


>06_03_0808 - 24799383-24801275
          Length = 630

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = +2

Query: 176 GGARRVAAVESGGEGVDLCGEVGELGHVVHAGL 274
           G A  V  V +GG+  D+ GEV  LG V H+GL
Sbjct: 345 GEAFAVKRVAAGGD--DVRGEVDVLGRVNHSGL 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,419,891
Number of Sequences: 37544
Number of extensions: 196324
Number of successful extensions: 844
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)