Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_I24
(716 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46787-5|CAA86743.1| 409|Caenorhabditis elegans Hypothetical pr... 31 0.82
U64608-3|AAB04593.2| 349|Caenorhabditis elegans Serpentine rece... 29 2.5
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 28 5.8
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 28 5.8
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 28 5.8
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 28 5.8
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 28 5.8
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 28 5.8
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 28 5.8
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 28 5.8
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :... 28 5.8
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 28 5.8
>Z46787-5|CAA86743.1| 409|Caenorhabditis elegans Hypothetical
protein C16C10.5 protein.
Length = 409
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 489 IFVCHNIFWCKQLSDCVVFCIIQFFIYL 406
++VC N W + L+ +VFCI FI+L
Sbjct: 163 VYVCFNRSWYRFLATWLVFCIFSAFIWL 190
>U64608-3|AAB04593.2| 349|Caenorhabditis elegans Serpentine
receptor, class v protein7 protein.
Length = 349
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -1
Query: 539 DINNNVVECLSN-SFVIRYLYVIIFFGVNS*V-TVLFFALYSFL 414
+ N N+V L+ + +I Y YVI FG+N+ V T +F+ LY +
Sbjct: 235 EYNLNIVAALTCVAEIIYYCYVIYVFGINTSVPTRVFYLLYDVI 278
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 495 HKIFVCHNIFWCKQLSDCVVFCIIQFFIYLMLLVTCSLKKGFL 367
H+I V N+F QL+ +F I+ I + +T ++K FL
Sbjct: 911 HRIAVVWNLFAFNQLTTAGIFIILLSIITFIFAITPTIKATFL 953
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 495 HKIFVCHNIFWCKQLSDCVVFCIIQFFIYLMLLVTCSLKKGFL 367
H+I V N+F QL+ +F I+ I + +T ++K FL
Sbjct: 911 HRIAVVWNLFAFNQLTTAGIFIILLSIITFIFAITPTIKATFL 953
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 78 YLFNC*F*LVFNIDCTYNVISYLFRS 1
YLF F ++FN++C ++ Y FR+
Sbjct: 435 YLFEVGFTILFNVECIIKILCYGFRN 460
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 78 YLFNC*F*LVFNIDCTYNVISYLFRS 1
YLF F ++FN++C ++ Y FR+
Sbjct: 435 YLFEVGFTILFNVECIIKILCYGFRN 460
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 78 YLFNC*F*LVFNIDCTYNVISYLFRS 1
YLF F ++FN++C ++ Y FR+
Sbjct: 493 YLFEVGFTILFNVECIIKILCYGFRN 518
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 78 YLFNC*F*LVFNIDCTYNVISYLFRS 1
YLF F ++FN++C ++ Y FR+
Sbjct: 493 YLFEVGFTILFNVECIIKILCYGFRN 518
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 78 YLFNC*F*LVFNIDCTYNVISYLFRS 1
YLF F ++FN++C ++ Y FR+
Sbjct: 539 YLFEVGFTILFNVECIIKILCYGFRN 564
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 78 YLFNC*F*LVFNIDCTYNVISYLFRS 1
YLF F ++FN++C ++ Y FR+
Sbjct: 465 YLFEVGFTILFNVECIIKILCYGFRN 490
>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform b
protein.
Length = 1147
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 495 HKIFVCHNIFWCKQLSDCVVFCIIQFFIYLMLLVTCSLKKGFL 367
H+I V N+F QL+ +F I+ I + +T ++K FL
Sbjct: 911 HRIAVVWNLFAFNQLTTAGIFIILLSIITFIFAITPTIKATFL 953
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 495 HKIFVCHNIFWCKQLSDCVVFCIIQFFIYLMLLVTCSLKKGFL 367
H+I V N+F QL+ +F I+ I + +T ++K FL
Sbjct: 911 HRIAVVWNLFAFNQLTTAGIFIILLSIITFIFAITPTIKATFL 953
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,728,349
Number of Sequences: 27780
Number of extensions: 270215
Number of successful extensions: 643
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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