Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_I23
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024881-7|AAK71417.1|  310|Caenorhabditis elegans Serpentine re...    28   5.0  
AC024755-7|AAO91688.1|  833|Caenorhabditis elegans Hypothetical ...    28   6.6  
AC024755-6|AAF59639.1|  877|Caenorhabditis elegans Hypothetical ...    28   6.6  

>AC024881-7|AAK71417.1|  310|Caenorhabditis elegans Serpentine
           receptor, class sx protein3 protein.
          Length = 310

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 137 INYAIIFICINSVAIL*ITRELSA*ILKSTCYRQINLHSYKICFLFL 277
           I+  I FIC  +V +L +  +L   +  +T YR+I   +Y    LF+
Sbjct: 85  ISLYIFFICAQAVIMLMLVVDLFIIVFFTTFYRRIENTTYTAMMLFI 131


>AC024755-7|AAO91688.1|  833|Caenorhabditis elegans Hypothetical
           protein Y34B4A.4b protein.
          Length = 833

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 372 ETKLQVNAQKKYSENIALKYTHRIAYIRIKINFVDNTLKFKLRLEF 509
           E  +     KK +EN  LK T   +Y+R+  N   +  +FK +++F
Sbjct: 363 EYMMMFGDDKKNNENEYLKGTTISSYVRLNNNLTTHEEQFKKKIQF 408


>AC024755-6|AAF59639.1|  877|Caenorhabditis elegans Hypothetical
           protein Y34B4A.4a protein.
          Length = 877

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 372 ETKLQVNAQKKYSENIALKYTHRIAYIRIKINFVDNTLKFKLRLEF 509
           E  +     KK +EN  LK T   +Y+R+  N   +  +FK +++F
Sbjct: 363 EYMMMFGDDKKNNENEYLKGTTISSYVRLNNNLTTHEEQFKKKIQF 408


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,705,646
Number of Sequences: 27780
Number of extensions: 206028
Number of successful extensions: 317
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)