Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_pT_I22
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0282 - 16749358-16749445,16749640-16749695,16749965-167501... 30 1.7
12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497 29 2.9
05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846... 29 3.9
02_01_0116 + 862401-862734,862823-863078,863177-863311,863395-86... 29 3.9
09_02_0427 - 9198363-9198485,9198831-9198895,9199029-9199341,919... 28 5.1
01_05_0496 + 22728097-22728401,22728506-22728670,22728771-22729041 28 5.1
12_01_0264 - 1929022-1930212 28 6.8
11_06_0180 + 20962420-20962528,20962618-20962699,20962831-209629... 28 6.8
08_02_0137 - 13049872-13050893,13051022-13051175 28 6.8
01_04_0072 - 15721866-15723563 28 6.8
01_04_0070 - 15704794-15706491 28 6.8
10_02_0189 - 6486737-6486916,6486988-6487260,6487364-6487576,648... 27 8.9
08_02_0446 - 17221514-17221626,17221960-17222035,17222381-172225... 27 8.9
>12_02_0282 -
16749358-16749445,16749640-16749695,16749965-16750137,
16750768-16750924,16751279-16751422,16751959-16752134,
16753024-16753045,16753845-16753937,16754259-16754431,
16754550-16754760
Length = 430
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -3
Query: 277 EYALEAASLHPAKALGIDDKKGNLNFDSDADFVILHP 167
E L+ A+++ AKA+ DD+ G+L AD V+++P
Sbjct: 355 ETVLKMATINGAKAVLWDDEIGSLEVGKKADMVVVNP 391
>12_01_0744 - 6688631-6688660,6689032-6690603,6690697-6691497
Length = 800
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 205 NFDSDADFVILHPKTLKVQSTWIAGECVYKCQN*DMNKTKYII 77
+FD FV L + + TW GEC++ C N D K ++
Sbjct: 476 SFDDPGMFVQLKLISWPMHDTW--GECLFNCANEDQEAQKVLV 516
>05_04_0443 -
21283680-21283940,21284044-21284118,21284620-21284649,
21286744-21287247
Length = 289
Score = 28.7 bits (61), Expect = 3.9
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Frame = +3
Query: 261 ASNAYSKLHSIESLNFTIQESKAVVL------PQRVFVPVT*AQPSSTVTICGPMRWLPS 422
+S+A S + IESL S A VL P R +PV+ + P + G LP
Sbjct: 11 SSSAQSDMDEIESLIHAAPPSAAAVLPARPPSPPRASIPVSSSPPLLPPPVAGSKPQLPP 70
Query: 423 GSPCAGTASLTSTKPSGLVLFAI 491
S + AS +S V AI
Sbjct: 71 FSSSSSVASSSSPPLPSSVSVAI 93
>02_01_0116 +
862401-862734,862823-863078,863177-863311,863395-864721
Length = 683
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 263 FQCIFQATFNRVFKFHNTRVQGSGASAEGFRSSDVSATVFYRHDLRSNAMVTIR 424
F CI T + K +QG G +A+ F+ D++ D R A V +R
Sbjct: 321 FLCIMVRTTCAMIKRRRQAMQGGGGNAQPFQGIDIADQPVKSFDDRRRAQVFLR 374
>09_02_0427 -
9198363-9198485,9198831-9198895,9199029-9199341,
9199482-9199620,9199705-9199767,9199905-9199986,
9200079-9200157,9200996-9201175,9201261-9201520,
9201650-9201734,9201813-9201959,9202067-9202177
Length = 548
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 249 CNEAASNAYSKLHSIESLNFTIQESKAVVLPQRV 350
C E A N +++H I++ F +VLPQRV
Sbjct: 498 CLEEADNVIAEVHIIDAQTFEGAPVAKIVLPQRV 531
>01_05_0496 + 22728097-22728401,22728506-22728670,22728771-22729041
Length = 246
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 523 DGIHTHPAALRIANRTNPEGLVLVSDAVPAQGLPDG 416
DG+H HPA L + + P G ++ A PA P G
Sbjct: 188 DGVHNHPAPLHLRPQLPPPGGYSIAGA-PAVVAPHG 222
>12_01_0264 - 1929022-1930212
Length = 396
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -3
Query: 319 SCIVKFKDSIECSLEYALEAASLHPAKALGIDDKKGNLN 203
SC +D + CSL ++L+++S+ +K L + K +++
Sbjct: 303 SCFFSLEDGLFCSLRFSLDSSSVIRSKNLEVFPTKAHVD 341
>11_06_0180 + 20962420-20962528,20962618-20962699,20962831-20962948,
20963024-20963062,20963181-20963343,20963706-20963921,
20964039-20964116,20964244-20964500,20964544-20964575,
20964815-20965197,20965262-20965831,20966250-20966343,
20966365-20966541,20966761-20966963,20968244-20968301,
20969126-20969381,20969553-20969789
Length = 1023
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 163 TLKVQSTWIAGECVYKCQN*DMN 95
+LKVQ TW+AG Y+C +M+
Sbjct: 1001 SLKVQFTWLAGAQSYECARGEMD 1023
>08_02_0137 - 13049872-13050893,13051022-13051175
Length = 391
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 98 HVLVLAFIYTFSSYPGGLNFQCFRVKY 178
H+L L F+YT G++F+ FR ++
Sbjct: 65 HLLTLQFLYTLKEMEDGISFRFFRKEH 91
>01_04_0072 - 15721866-15723563
Length = 565
Score = 27.9 bits (59), Expect = 6.8
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = +2
Query: 464 TFGISSVCYSERCWMSVDTISYYTIIYLFF 553
+F CY+ W++V +++ T+ +FF
Sbjct: 85 SFNNHGECYTSNWWLTVSLVTFLTVFCIFF 114
Score = 27.9 bits (59), Expect = 6.8
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = +2
Query: 464 TFGISSVCYSERCWMSVDTISYYTIIYLFF 553
+F CY+ W++V +++ T+ +FF
Sbjct: 335 SFNNHGECYTSNWWLTVSLVTFLTVFCIFF 364
>01_04_0070 - 15704794-15706491
Length = 565
Score = 27.9 bits (59), Expect = 6.8
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = +2
Query: 464 TFGISSVCYSERCWMSVDTISYYTIIYLFF 553
+F CY+ W++V +++ T+ +FF
Sbjct: 85 SFNNHGECYTSNWWLTVSLVTFLTVFCIFF 114
Score = 27.9 bits (59), Expect = 6.8
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = +2
Query: 464 TFGISSVCYSERCWMSVDTISYYTIIYLFF 553
+F CY+ W++V +++ T+ +FF
Sbjct: 335 SFNNHGECYTSNWWLTVSLVTFLTVFCIFF 364
>10_02_0189 -
6486737-6486916,6486988-6487260,6487364-6487576,
6489081-6489206
Length = 263
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 424 PDGNHRIGPQIVTVE 380
P GNH GP I+T+E
Sbjct: 168 PQGNHAAGPDIITIE 182
>08_02_0446 -
17221514-17221626,17221960-17222035,17222381-17222536,
17222645-17222723,17223858-17224087,17224938-17225076,
17225158-17225220,17226198-17226279,17226366-17226444,
17227046-17227225,17227331-17227590,17227704-17227806,
17227915-17228058,17228148-17228246
Length = 600
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 276 SKLHSIESLNFTIQESKAVVLPQRV 350
SK+H I++ NF + ++LPQRV
Sbjct: 537 SKVHIIDARNFESEPIAKIILPQRV 561
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,041,034
Number of Sequences: 37544
Number of extensions: 284646
Number of successful extensions: 730
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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