Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_I20
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    27   1.9  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   5.7  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   7.5  
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    25   9.9  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    25   9.9  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   9.9  

>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +1

Query: 364 GLTRGPTSSKNIQD--TFISTCQNRCSEY 444
           GL   PT  + + +  TF+ TC + C EY
Sbjct: 87  GLIDDPTKPRQLDEAVTFVGTCPDMCPEY 115


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 292 LHPSNQKSLQLHGRNRQGGGTYPCGLTRGPTSS 390
           L+P++ + + L+ ++ Q   TYP  L   P+S+
Sbjct: 403 LYPTSAEQMGLYPQDSQNKDTYPKSLVNRPSSA 435


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 514 SGIRSFETLQGVSLIVLYHMKKRYILNTYSD 422
           +GI SF+ +QGV +    +M KR I     D
Sbjct: 139 AGIHSFDAVQGVEVYKKKYMSKRDIQEHIQD 169


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 404 SCMFLLEVGPLVSPHG*VPPPCL 336
           +C+++L    ++S HG VPP  L
Sbjct: 104 ACLYILNKRKVMSQHGLVPPAML 126


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 343 GGGTYPCGLTRGPTSSKNIQDTFISTCQN 429
           GGG +  G+ RGP   K++  T   T ++
Sbjct: 92  GGGMFGGGMPRGPRKGKDLVHTIKVTLED 120


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 338 LFLP*SCNDFWFEGWSSRCNYTETLELISQ 249
           LF P   ++ WF  W SR      L +ISQ
Sbjct: 769 LFAP---SNSWFNSWHSRLELDSILAIISQ 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,826
Number of Sequences: 5004
Number of extensions: 47238
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)