Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_I17
         (309 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0203 - 17863130-17863940,17864023-17864341,17864653-178647...    27   4.0  
02_02_0336 + 9081958-9082222,9082466-9082569,9082632-9082681,908...    27   4.0  
02_05_0582 + 30124280-30124487,30124600-30124698,30125438-301255...    25   9.2  
02_01_0708 - 5298456-5298664,5299615-5299768,5300209-5300301,530...    25   9.2  

>06_03_0203 -
           17863130-17863940,17864023-17864341,17864653-17864716,
           17864811-17864929,17865515-17865640,17866626-17866632,
           17867421-17867562,17867720-17867738,17868082-17868292
          Length = 605

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 202 FRQPQPQA*ASADLRRRPCLRIF 134
           F +P PQ  A  DL+R  C R+F
Sbjct: 466 FDRPYPQCIAYLDLKREECSRLF 488


>02_02_0336 +
           9081958-9082222,9082466-9082569,9082632-9082681,
           9083484-9083566,9084129-9084257,9085821-9085881,
           9086010-9086826
          Length = 502

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 202 FRQPQPQA*ASADLRRRPCLRIF 134
           F +P PQ  A  DL+R  C R+F
Sbjct: 361 FDRPYPQCIAYLDLKREECSRLF 383


>02_05_0582 +
           30124280-30124487,30124600-30124698,30125438-30125589,
           30125708-30125896,30126001-30126111,30126370-30126536,
           30127923-30128184
          Length = 395

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 282 LEGKPASCAFNMFYKLFTLIALLVAVAFA 196
           L G P  CA   F +  TL+ + +A+A A
Sbjct: 54  LRGNPTFCAVLAFVRFVTLLLVALALALA 82


>02_01_0708 -
           5298456-5298664,5299615-5299768,5300209-5300301,
           5300644-5300847,5302034-5302174,5302723-5302827,
           5303485-5303874,5304573-5304713,5304756-5304845,
           5305779-5306288
          Length = 678

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 216 LVAVAFASPNPKPEPVL 166
           L AVA ASP+P P P+L
Sbjct: 17  LPAVAAASPSPSPPPLL 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,277,973
Number of Sequences: 37544
Number of extensions: 96107
Number of successful extensions: 392
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)