Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_I16
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.72 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    27   2.2  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   3.9  
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi...    26   6.7  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   8.9  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    25   8.9  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 533 SIFGLDRTPNFVDTLNVGLSGYSKSWTQIIPNSQIVVIPV-PPYDPSQWKAQLFVTPSKV 357
           SIF    TP+  ++ +  +S YS   T  +P+S     P    Y PS  ++   + PS V
Sbjct: 85  SIFSESATPSETNSYSSPVSSYSDPATSQLPSSTSFFSPTSSEYTPSSTESSSLLDPSSV 144


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -3

Query: 491 LNVGLSGYSKSWTQIIPNSQIVVIPVP 411
           L++GL+   K W++++  +  ++IPVP
Sbjct: 219 LDLGLNHVVKRWSKVVDRNSYMLIPVP 245


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 208  GWHLIHIFT*V*SSISMISCLSFRSFQCKYSTHPVMITIIAVSTKTLLRITLLGV 372
            GW L  +      ++S I CL+ R F   Y +   M   + +ST ++L  T++ +
Sbjct: 920  GWRLAAVLV----AVSPILCLTSRMFSYIYVSTERMCQDVVISTTSILHKTIVNL 970


>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
           L34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 216 MPTFNTIGHFHSILWLTVGSEF 151
           +PT N  G    + W T G+E+
Sbjct: 48  LPTMNIFGQMQQVRWKTYGNEY 69


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 303 TPCYDNYNCS*YKNTF-ENHFA 365
           TPCY+NY  S  KNT  +N+F+
Sbjct: 282 TPCYNNYRSS--KNTLPKNYFS 301


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 296 YLHWKERNDRQDIIEIDDQTY 234
           Y+   ERND Q I+EI D  +
Sbjct: 19  YISHPERNDNQGIVEITDLVF 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,567
Number of Sequences: 5004
Number of extensions: 67992
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)