Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_pT_I16
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0705 - 20846810-20848165                                         30   1.7  
11_01_0461 + 3569700-3572373,3572477-3572847                           30   2.3  
01_01_0091 - 719842-720902,721042-721071,721521-722226                 30   2.3  
04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402     29   4.0  
11_02_0047 + 7716315-7716420,7716518-7716647,7716785-7716856,771...    29   5.3  
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    29   5.3  
11_01_0646 - 5219358-5219377,5219718-5220459,5220749-5221072           28   7.1  
01_01_0120 + 1119319-1119447,1120565-1120632,1121682-1121928,112...    28   9.3  

>07_03_0705 - 20846810-20848165
          Length = 451

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = -3

Query: 476 SGYSKSWTQIIPNSQIVVIPVPPYDPSQWKAQLFVTPSKVILKSVFVLTAIIVIITGCVL 297
           +G S  WTQ  P ++    P PP+ P+   +     P    L        +    TGCV 
Sbjct: 109 TGSSLIWTQCAPCTECAARPAPPFQPAS-SSTFSKLPCASSLCQFLTSPYLTCNATGCVY 167

Query: 296 Y 294
           Y
Sbjct: 168 Y 168


>11_01_0461 + 3569700-3572373,3572477-3572847
          Length = 1014

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -3

Query: 422 IPVPPYDPSQWKAQLFVTPSKVILKSVFVLTAIIVIITGCVLYLHWKERNDRQDI 258
           +PV  Y P      L      V+LK V  L  I+ + TG  + L W+++++R+ +
Sbjct: 629 LPVCTYRPPSSTKHL----RSVVLKVVIPLACIVSLATGISVLLFWRKKHERKSM 679


>01_01_0091 - 719842-720902,721042-721071,721521-722226
          Length = 598

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
 Frame = -3

Query: 371 TPSKVILKSVFVLTAIIV-IITGCVLYLHWKERNDRQDIIEIDDQTYVK 228
           +P+KVI+ +V V T +++ ++    LYL  K +ND  D I++  + ++K
Sbjct: 239 SPAKVIIVAVSVPTIVVLTLVVASALYLSLKTKND--DEIQLKVEMFLK 285


>04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402
          Length = 566

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 418 LCHLMIHLNGKHNYLLH 368
           LC L +H+NG H  LLH
Sbjct: 4   LCDLKVHINGHHTLLLH 20


>11_02_0047 +
           7716315-7716420,7716518-7716647,7716785-7716856,
           7717007-7717078,7717274-7717345,7717684-7717845,
           7718105-7718176,7718435-7718503,7718788-7718859,
           7718992-7719129,7719386-7719888,7720007-7720171,
           7720267-7720403,7720488-7720707,7720793-7721028,
           7721165-7721632
          Length = 897

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 512 TPNFVDTLNVGLSGYSKSWTQIIPNSQIVVI 420
           T +F D  ++G  GY K +  ++PN  ++ +
Sbjct: 574 TNSFSDANDIGTGGYGKVYRGVLPNGHLIAV 604


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +1

Query: 550 AKYADWGNCAQTPVL*VPSWDQVLYPIFGPGKLVPKVA 663
           A   DWG  A  PV     WDQ   P+     +VP VA
Sbjct: 253 ATVGDWG-AAPAPVAAAEGWDQAGAPVATEAAVVPPVA 289


>11_01_0646 - 5219358-5219377,5219718-5220459,5220749-5221072
          Length = 361

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -3

Query: 617 TWSQEGTYRTGVCAQLPQSAYFALQLPYSIFGLDRTPNFVDTLNVGLSGYSKSW 456
           +W  EG ++ G C  L      A +LP S  GL   P    T+ V L+    SW
Sbjct: 40  SWKSEGGFKNGYCQVLEN--VLAKKLPSS--GLTAVPTKFGTIEVMLTKSGFSW 89


>01_01_0120 +
           1119319-1119447,1120565-1120632,1121682-1121928,
           1122430-1122498,1122782-1122907,1123326-1123406,
           1123484-1123561,1124084-1124319,1124399-1124545,
           1124864-1125152,1125231-1125352,1125713-1125749
          Length = 542

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -3

Query: 494 TLNVGLSGYSKSW---TQIIPNSQIVVIPVPPYDPSQWKAQLFVTPSK 360
           +L   +  Y+ +W    Q++P    V+I  P   P QWK  L+   +K
Sbjct: 427 SLRASMGPYAYAWKGSAQLVPELNNVLIYQPSGKPLQWKNPLYTDNAK 474


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,166,166
Number of Sequences: 37544
Number of extensions: 385529
Number of successful extensions: 814
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)